RNA id: TU2028322


Basic Information

Item Value
RNA id TU2028322
length 3473
RNA type TUCP
GC content 0.39
exon number 2
gene id G1771092
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 7251784 ~ 7256717 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcacatatacacatacaaacattcataccccagaataacaatctacactgatttaaaatatacacatacataatactaaaatgctaagagaaaatagtaataaagtaCAAATAGTAATTATATGTATGCACACCTACACAGACATAAGCACTACTGAGGGCTGGTGGGACTCTAGTCGGGAGAGAGGCCCACGGTCAGCCAAAGGCAGAACGGCACAAAACATAAACCTGCTAACCAGGTGTCTGCCCCCTCCCAACCATCACCCCCAGTCCCCTGCAAGCAATAAATAAATGGTATGGCAGTAAGAATAATGTAaggattgtaaaataaataacgaaacaaaacaaaagtgGGGGAATATAAGTATATCCGTCCGAAGGTGTCAGTGATCAAACCTGGAAGTAAAAAATATGCATCGCTGAGCACAGCCGGGATGAAAGTGAATGTAACGTTAATTGAGAGCTCTGACCGCCATCCATTGGTCTGCTCAGCGTCTTACATGTTCGGTAGCCCTTGTTGAGCCCGTTTAATACGTTTTCACCcaatatggtatagtatggattCGAGTCCATGAGCAGACCCTAACACGCAATAACAAGGCACTCTAACCTGTACGGGGGATTGGTGTATATCCCCGGATAAACTTCTCTGTGTCCAAAACCGAGGAGAGCCAAATCTTCTCACCGGAAGGAGGGGTAATTCTTAGTCTTGCAGGGAAGAGTAAGGCTGGGCGAAGATGGAGTTTGTATAGTTTGGTCATGACATCTCTGTAGTCGGCGCGATGCTTTGCCACATCGGGAGCATAATCCTCATAGACACGGAATGGATGCCCTTTATGTGACAGGTTGCCCCTCATTCGAGCTTCACGCAGGATAAGATCCTTGGTCTTGAAACAGATGATTACTGGGCGAGGACGTTTGCCCGGTCCAGGCACTGGGACAAGGGAGCGATGTGCGCGGTCCAGCTGGGGATCCGAATCCAAAACATCCGATCCCATTGCATCCTTCAATAGCTTGGCGAAGAAGTCGGTGGGGCGAGAGCCCGCCTCTACCCCCTCTGCCAGACCAACAACGCAAAGGTTATTACGTCTGGATCGGCCCTCCAGGTCCACCACTTTCACAGAAAGCCTCTGCACAGTATCCTGGAATGACGTGCATAGCTTCTCTAACTCGTCGATCCTACCAGCGTTGAATTCAGAAGCTTTCTCAAGGTCCACAATACTCTGGCCATGCGAAGCGACCGTTCGAATGATGCTCTCGATTTTGGTGTCCAGTTCAGCAATAGTGGCCTTAAGATCCTCAGCTATAGCAACACGTAGCTCCCCCAAAGCCCGGGTAAGTTTTGTAAGTGTCACGTTGTTGCATGTGCCTCCCGCCATGTCTGTCTCGTTGCTTAGTGGGGAGTAGGCCTCCGCTGTGGATTTATTGTCCTTTGGTCGCTTGTTACTCGGCATTTTCATATAAAAAGTTACAATCTTGTATTAGAAAGAAACTTTTGTTGTAAAAAGTGCCATAAAGTAGGTTAAATTAGATTATTTCGCAAAAAAGTTGCAGGAGCCTCTCACGCACAGCCGTTCACTCCAACATGCTAGCTCCGCCTCCAAGTTTCTTATCTACTTTAAAGAAGTATCTGTGCTACTTATATATTTtcttaaatatatatttaccaATTTAAAAACGTAAAACATTTCTCTCATATCTCTCAAATACCACTAAGCTTCTAACTGTTTGACTATCTAAAATCATTGATTTTAGAAGAAACATGTCTATGAGTGGCTTTTCTCTAAAGTCTTTACATTTCCTTAATCAATCTATCTTAATCCTAACAATAATCCTAAATCATCACAGATGTCCTATATTCCTGTTAAATGTAATACTATTTAAAAACTTGTAATAATCAAACAAAGTCTAATAAATGCTAACCATATCAAAATCCTTCCTACACTAACAAGCCCTTTCCTTCAGGGACCCTCAGTATTCTATCTGACAATAACATGAATTTAATATGTGTTGCAAAGTGTGGAATACCTCATCTACAGTAATTTATCACCCCTAAAAACTAACTTATTTTTCTATGTAATTCCCTGCCCTATTGGCTTAATCTCTCTCCTATCCAAACCTCAATGTATATTTTCTTCCCCTATTTATTCTCAATGATAAATATGACTTTTTCTCTGTTACAATACCAAATCATTAATATCCCATTCAAAAACTTCACAGCTAATGTTGTTAAACAGGATCCTGAACCACTTTCTCATTTGCGGTTCAACCAATAATTCTAACCCCCCAACCAAAACTCCATTATAATGAATTTACCTTAAAACTAGTGACTCAATGTGACCACATTCATTATACAAATGACTCTCCCTTGAGGCTGATCAGACCTCAGAAGACAGTCACGATAAGATCAATAGgtcataaaataaaaaatttcACTTGTATGATTAAAACTCATAAACTAAAAACTCATAAAGTTCCATATGTGAGTGTGCCTCTTTAAAATATCTTTGCACTAAAACAAATAGTCCTAACAATGGTTTTATGTGTATATAGTTGCAGACCTGTTTTAATTTGGTCGTTTATGGCCTCATTCTCCCCAAGATTATAATCCCAGGAAACATCTAAAATTGAGACACCTAAACATCAATATTCCCAGAAGAACACAACACTCCTAACTAGCATTCACTATGCTAATTCCGATTCAGAAACTCAAAAGTGAACTATAAACTAAACCTAATGATGATTCCCCTTTAactcaaatcattaatcataagtTTTAAACAACGTCAATGTTTATGTTTACTTAAATGAACATGCTACTCTTAGATACAATTTACCCGATAACATTATTGTATTACTTTTTCCCCTCTGCCGCAAATGTCGTACATTTCTCAGTGTAAGAAATCCGTAATTTAATCCCCGATATTTAATAAATATGCATTCGCATTCTCCCATGGCCTCTTTAATTGACTTATTTTAGATAACTTCCATCCGTCCCGGAAAGAAGAATCCTACTTAAGCACGCATGTCTACGTATCAGGGGAAAAACTtgaataaccaaattcaacctagcttaCTTCCCGAAACATATGCAGTTATGTTTTTCTATAGAGGTTGCTTTTCAAACTTTAAATACCCTAACATGGTTCCACACAATTGAAAGTGCTCAAATTCACTGGTGTTACATAAACAATCAAACCTGGAATCACAACCATGGAATCCATTACCACGATGTTTTATGATTCATACATCCAGTCTCTCTCCCATAGCCTAGTTCAATCCAAACAAACGCCACAAACCTTATGATGCCTACCTAGGTATCAGCTGATAGTTTTTAGCATCTTTCCTGTCTATCCTGGCAACTCTTAAATTactgttaaaaatgtattttgtaatttATATCAACTTCTGAAAAGTTACTCGAAACACTAATACACACATTTAACAGACAAACAATTTTCTCCGTTACCCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2028156 lncRNA downstream 229102 7022472 ~ 7022682 (-) True G1770941
TU2028146 lncRNA downstream 244533 7006871 ~ 7007251 (-) True G1770931
TU2028140 lncRNA downstream 254975 6996565 ~ 6996809 (-) True G1770925
TU2028023 lncRNA downstream 304345 6875219 ~ 6947439 (-) True G1770821
TU2028047 lncRNA downstream 345000 6849660 ~ 6906784 (-) True G1770840
TU2028327 lncRNA upstream 9703 7266420 ~ 7269109 (-) False G1771096
TU2028328 lncRNA upstream 9703 7266420 ~ 7269109 (-) True G1771096
TU2028350 lncRNA upstream 32718 7289435 ~ 7295790 (-) True G1771107
TU2028366 lncRNA upstream 49381 7306098 ~ 7306492 (-) True G1771123
TU2028446 lncRNA upstream 117274 7373991 ~ 7374296 (-) True G1771196
XM_021578737.2 mRNA downstream 83402 7103577 ~ 7168382 (-) False slc39a10
XM_036958569.1 mRNA downstream 83402 7103577 ~ 7168382 (-) True slc39a10
XM_021578740.2 mRNA downstream 83409 7103577 ~ 7168375 (-) False slc39a10
XM_036958568.1 mRNA downstream 85742 7103577 ~ 7166042 (-) False slc39a10
XM_036958567.1 mRNA downstream 93809 7103577 ~ 7157975 (-) False slc39a10
XM_021578741.2 mRNA upstream 66880 7323597 ~ 7326019 (-) True LOC110501290
LOC110502040 mRNA upstream 82510 7339227 ~ 7346841 (-) True LOC110502040
XM_036958571.1 mRNA upstream 164587 7421304 ~ 7423883 (-) False LOC110501291
XM_036958572.1 mRNA upstream 164587 7421304 ~ 7423889 (-) False LOC110501291
XM_036958573.1 mRNA upstream 164587 7421304 ~ 7423889 (-) False LOC110501291
TU2026785 other downstream 1290969 5960150 ~ 5960815 (-) True G1769618
TU2026425 other downstream 1426477 5800761 ~ 5825307 (-) True G1769281
TU2023362 other downstream 3477775 3447431 ~ 3774009 (-) True fgf14
TU2023360 other downstream 3800446 3447431 ~ 3451338 (-) False fgf14
TU2023027 other downstream 3925441 3325721 ~ 3326343 (-) True G1766126
TU2028728 other upstream 205496 7462213 ~ 7464692 (-) True G1771426
TU2031399 other upstream 1368305 8625022 ~ 8641138 (-) True LOC110501323
TU2031467 other upstream 1480462 8737179 ~ 8758540 (-) False LOC110501325
TU2031468 other upstream 1480462 8737179 ~ 8743033 (-) True LOC110501325
TU2031541 other upstream 1506575 8763292 ~ 8768047 (-) False LOC110502107

Expression Profile