RNA id: TU2031430



Basic Information


Item Value
RNA id TU2031430
length 207
lncRNA type intronic
GC content 0.50
exon number 1
gene id G1773857
representative True

Chromosome Information


Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 8616602 ~ 8616808 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtttcatctgaccatatgacattctcccaatcttcttctggatcatccaaatgctctctagcaaacttcagacgggcctggacatgtactggcttaagcaggtggacacgtctggcactgcaggatttgagtccctggcggcgtagtgtgttactgatggtaggctttgttactttggtcccagctctctgcaggtcattcactagg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2031428 lncRNA downstream 1586 8614671 ~ 8615016 (-) True G1773855
TU2031424 lncRNA downstream 7679 8608717 ~ 8608923 (-) True G1773851
TU2031343 lncRNA downstream 134196 8480013 ~ 8482406 (-) True G1773773
TU2031275 lncRNA downstream 157626 8408496 ~ 8458976 (-) True G1773710
TU2031271 lncRNA downstream 203586 8410302 ~ 8413016 (-) True G1773708
TU2031398 lncRNA upstream 2639 8619447 ~ 8623484 (-) True G1773825
TU2031460 lncRNA upstream 62567 8679375 ~ 8679685 (-) True G1773886
TU2031482 lncRNA upstream 86475 8703283 ~ 8703505 (-) True G1773906
TU2031555 lncRNA upstream 188531 8805339 ~ 8805639 (-) True G1773966
TU2031517 lncRNA upstream 204046 8820854 ~ 8824347 (-) False G1773936
LOC110502043 mRNA downstream 123709 8443607 ~ 8492893 (-) True LOC110502043
XM_021578798.2 mRNA downstream 306133 8294881 ~ 8310469 (-) True LOC110501321
XM_036958618.1 mRNA downstream 313111 8294881 ~ 8303491 (-) False LOC110501321
XM_036958616.1 mRNA downstream 442724 8162076 ~ 8173878 (-) True mfsd9
XM_036958615.1 mRNA downstream 457087 8100745 ~ 8159515 (-) True inpp4aa
XM_021578802.2 mRNA upstream 8007 8624815 ~ 8684785 (-) False LOC110501323
XM_036958619.1 mRNA upstream 14413 8631221 ~ 8684792 (-) False LOC110501323
XM_021578804.2 mRNA upstream 120367 8737175 ~ 8742339 (-) False LOC110501325
LOC110502107 mRNA upstream 147216 8764024 ~ 8767825 (-) False LOC110502107
XM_036958620.1 mRNA upstream 153360 8770168 ~ 8782990 (-) False LOC110501327
TU2028728 other downstream 1151910 7462213 ~ 7464692 (-) True G1771426
TU2028322 other downstream 1359885 7251784 ~ 7256717 (-) True G1771092
TU2026785 other downstream 2655787 5960150 ~ 5960815 (-) True G1769618
TU2026425 other downstream 2791295 5800761 ~ 5825307 (-) True G1769281
TU2023362 other downstream 4842593 3447431 ~ 3774009 (-) True fgf14
TU2031399 other upstream 8214 8625022 ~ 8641138 (-) True LOC110501323
TU2031467 other upstream 120371 8737179 ~ 8758540 (-) False LOC110501325
TU2031468 other upstream 120371 8737179 ~ 8743033 (-) True LOC110501325
TU2031541 other upstream 146484 8763292 ~ 8768047 (-) False LOC110502107
TU2031542 other upstream 146484 8763292 ~ 8768047 (-) True LOC110502107

Expression Profile