RNA id: TU2031517


Basic Information

Item Value
RNA id TU2031517
length 3474
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G1773936
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 8820854 ~ 8826155 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccgtcctcctatagctcctcccaccagcctccactggtacaaGTACTGAATGGCTTTGCcatttaaaaataaacaaaagagTAATCGTTATCTAAAACTAGGACaaactactactgctattttCCAGTACTACTACTTATGGGGTATTTCCAGGTTTGAACAGGTTTGACATTATTTTGTGATCCTTGCCAAAGCAAAGCAAAAGCCTTTCTCTCTGCGGCTGGGTTGATGTCTCGATGCTGCTCACTTCACTGGTTTTCTGTCCTTGAGGTCATGGCAGGCCGAATGGGACTTGTACCTATTTGTAGTGCTGTTTGTAGTCGTGAACCATTGGCCATCGGCAACATGGGAAGTTACTGAAATATTTATCTGAGGAACGACTAAAGGATtagagataaatatatatatacaacttATGTAAGatattcatattttatatttgaactAGTATGTTATCAAGACTGAatgtaatgttttgtcatgctTATACAAAAAAAAAcgtacaaaaaaaacatttttattaatGTCAAGACCAAAAACTTTGACCGCACCCCCTTGGTGCGTGATTTGCGGACACCTGTGCCCATTACATGTGTGGGTGTGGTCTCTTGAGTGAGAGAGGCTTGCTGTGGTGCTTCAATCGGACAGTCCCTGCTTGTACAGTTGCTAGGGGAACAAACAGACTGATGCGCCTGATCTTAATCTTTCATCTTTTTTGTCTGGTTGTTTGGTTTACTATGGATTTGAATTGATGTGCTGTTTTTAACAAtcatttgaatgtttttttttttagtacTTATGCCTTTAATTGTTTTGTATAGCATGAGAGGGCAAGATCACTGTCTTTCTAGGTTTGACAAAAGATTAACATTGACATTTATGCCTTATTGTTATTTAGAAGACAAGCATTGTAGCATATTGTTGTTTGTGCGACAGTGTATGAGAGTATTCTAGTGAGAGAGGCTACCTCCTCGTTAGTTTTTGTGTTTAGCTAGCTCACTCAGTGCATAGGTCTTTGCTGAAAATCTACAGTGTATTTTAGGCATAATTTGGGAGAGTGCTGTTCTGGCGCGGTTATGTTGCTACCTATGATTTTAGGGGTGACTCATACAGGTCGGAATACCTATAGAAAAGCTTTACTAATAACTGAACTCcagcaatggtgtgtgtgtgcgtgcttgtgtgtgtgcgcgtgtgtgtgtgcgcatgtgcatgTGTGATTGAGAGAAGGGAGTGCTGACTGCAGACCATGATGGTGCGTTTGTTTTCAGTTTACAGAAGAGAAAGATGAGATTATGATAAAATCATTCAAGGGAAGAAGGGGATGATAATATTGAATAGGTGTTTCCTCTGAGTATAAGACTTGTGAAGTTGTGGATCTCTATCTGGTTCGTCTGATGCTCTAGAAGTGGATCTGTGTTGATGCATGTGGTCTACCCCCCTGTGTGGTGGGTGTAAAGGGAAAGTGCAGAACGGCACCAGGAAGTCTGGGGTAACTAGCTGGGTTAAGGGAGCTGTTGTATACCTCATTTTTAACTCGAGACTAAGTGAAACCTGCTTTAATCTACTttagaaataaaaaaatgtaaagctgaataTTATAaaaaacataaacataaacatCAAGGTCCTGTCAGAGAAGCCTACAGATGTCCGTTTTTAGTGTCCAGTGTCAGTTGCAGCCACCGGGGGGAGACACGCACCAGTACCAGAATGTCTGcttatttttgtataatattttttttacaagagCATAACCATCAGTCTCCCTAAACACACTGGCCTCTCAGACCTCAACCTCCAATTGTCTCATAAGGCTGAAAGTATTatccacatttttatttggttttACCTCTGAAATATTTACCACTAGTATGTACTTGATTTACCCCTCCATTCTGTTTTCTATGATTTGACAATCCTGCCCTATTTTTATTCTAATTTAGATTCTGAATGtagatgttggtgtgtgtgtgtctgttcaccTGGTGGCACTCTGTCTTGCTGTactctctttctttcctgtgggAACGTTAACCAAAGACTTCTAAAGTGATTGTATATGGACTACACCATCTCTCACCCCTCTGCCTCACTATCCCATTAGACACACATTCAGCTGTGCACACCGGTAAAGTCAATACACCTATATGGCAGAGCTGTGTGTGCACCGGAAACACAACTGGTACCTGTAGCAGTGCCTGTGGATGGGGATAGATGGGGATAGATTGAGTGTGGAGGGGCAAAGTGGGCTTCTCTGATGGACAGGTCAATTAACCAATCCCGTGGTGGCTGGGTGATGTTTGTTAATACACACTGAGGGTTGATCCTGTGCACACGGTTTATGCTCAggactcactgtctctgtctgtctgtctgtctgaagaacTGTTGCTAGGACACACATGTTCAAAGACTGTCACGAAAATACACTGTTTCTGCCTCTTGGGTACAGTGTGTCTGTTTGGCTCCAAGTCAGTGCATTGTAGTTGCCAGGACACATTGTCTCTAGGATACACATTCTCTGGTTCTAGGgtactgtttctgtctctctgtctcatctccaTTTTCTTTCTTACATTCCCTCCCTCATTTCTTATTATGTTTCTCGATTCTCTCTGTTCAGCTTTGACACTATGCATCATGGTCCTTCACTCTGCATGGCCTGTGTCCGATTGGCTAAACTGTTTGGCCAATGGGGTCCCAGGGAAGCTTTGTTTGATGCTTTATTCCAAGTGGGGAGTTGTAGGATCTCACAAGCATTATCCCAATGCAAAAATATCCAAATATTTAATGTTTTACAAACGCAAATACCAAAGATAACTCTCTGTCctgtcactcgctctctctcccttcctctcaccctgcAGCTTGTGTATTAAGAGACAACCCCAGCACTGGCTTTAGTTCTAGCCTCAGTAATTCCAAAGCATAGATGTATATTTTGGTATATTTCTGAGAAACCTAAATGAAAAACTTCTCGTTTGTTTGGTGTATCGCTCTTTTTCTGTCACAGCATGGAACTAATTGCAGAACTGTCTTACACTTGGTAGGTTAAAGATATAGTATTTTTGTATGTTTTGGGTGTGTCAAATAATGTGTGTGATCATATCAGTCAACACGGCCCAAGTGACCatggttttaaaaaaatatataaaaaaacaaaataaggTAAACCTGTACATATTACTTCTGTTTGTGGATTTTTGAGAAATGCATTCTGTAAAATCAGTTTGGGCTAAACTAAAGGAATGTGTCCACTGTATCGTCCCAGGCTGTAGTCTAGAACTCTGGGAGCCACGCTGTCGTTGTGACGCGCGGTTCTACCGTTCCAGTTTGGACTAGAACACTGCTCACTATGGACACATGCCTCAGATCCGACTAcgaaacgccccccccccccccagacatggCGGGTGGTGGCATATAGAACTGAAAGATTGTGTAGAACATTTTAAAGTATGTGAATCAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2031555 lncRNA downstream 15215 8805339 ~ 8805639 (-) True G1773966
TU2031482 lncRNA downstream 117349 8703283 ~ 8703505 (-) True G1773906
TU2031460 lncRNA downstream 141169 8679375 ~ 8679685 (-) True G1773886
TU2031398 lncRNA downstream 197370 8619447 ~ 8623484 (-) True G1773825
TU2031430 lncRNA downstream 204046 8616602 ~ 8616808 (-) True G1773857
TU2031523 lncRNA upstream 1954 8826301 ~ 8827680 (-) True G1773938
TU2031566 lncRNA upstream 102586 8926933 ~ 8929426 (-) True G1773977
TU2031631 lncRNA upstream 105307 8929654 ~ 8929886 (-) True G1774034
TU2031635 lncRNA upstream 108020 8932367 ~ 8937720 (-) True G1774038
TU2031636 lncRNA upstream 109731 8934078 ~ 8939330 (-) True G1774039
XM_036958625.1 mRNA downstream 13021 8798745 ~ 8807833 (-) True LOC110501332
XM_021578807.2 mRNA downstream 37794 8770891 ~ 8783060 (-) True LOC110501327
XM_021578811.2 mRNA downstream 37810 8770891 ~ 8783044 (-) False LOC110501327
XM_021578808.2 mRNA downstream 37835 8770891 ~ 8783019 (-) False LOC110501327
XM_021578812.2 mRNA downstream 37864 8770891 ~ 8782990 (-) False LOC110501327
XM_036958637.1 mRNA upstream 3388 8827735 ~ 8843882 (-) False LOC110501335
XM_036958633.1 mRNA upstream 3388 8827735 ~ 8843884 (-) False LOC110501335
XM_036958629.1 mRNA upstream 3388 8827735 ~ 8843885 (-) False LOC110501335
XM_036958639.1 mRNA upstream 3388 8827735 ~ 8851677 (-) False LOC110501335
XM_036958627.1 mRNA upstream 3388 8827735 ~ 8851748 (-) False LOC110501335
TU2031541 other downstream 52807 8763292 ~ 8768047 (-) False LOC110502107
TU2031542 other downstream 52807 8763292 ~ 8768047 (-) True LOC110502107
TU2031467 other downstream 62314 8737179 ~ 8758540 (-) False LOC110501325
TU2031468 other downstream 77821 8737179 ~ 8743033 (-) True LOC110501325
TU2031399 other downstream 179716 8625022 ~ 8641138 (-) True LOC110501323
TU2031716 other upstream 234629 9058976 ~ 9063201 (-) True gpr161a
TU2031767 other upstream 277405 9101752 ~ 9103439 (-) False G1774133
TU2031771 other upstream 277405 9101752 ~ 9123249 (-) False G1774133
TU2031837 other upstream 464932 9289279 ~ 9291975 (-) True rpl8
TU2032076 other upstream 910895 9735242 ~ 9737856 (-) True fundc1

Expression Profile