RNA id: TU2031770


Basic Information

Item Value
RNA id TU2031770
length 1610
lncRNA type read_through
GC content 0.44
exon number 2
gene id G1774133
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 9101752 ~ 9123249 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAACAAAAAGCATGAATTActgaaatgaaagctagacagtcagggagcatcggAAATTCCAAAAACGATGGATAAAGGACTACATTTAGCCAATTTTAGCTTTTTACTGTCAAAAGGCCTTTTAAAGACAAAGAGAAATTCTCTCTTGCCACTATATTGTCatggatccctccggaactttcattatgCACAcatgtcccctattcccactgattagtacttgtataagtgtgccctttggtttctaTCGGGCTGTCGATTGTTGTTCCCGTGTCCACTGGTGGTGcgagtacctatgcgttggtgcagctgttatgctgcgtgctatatatatTGTGTATTATGGGAATCGTCCTGTGGCGTTCAACAGGGTttaccctcgctcttttgtttgggttcagcccagtgtttttgtatacgtgtttgttttgggtgtattaaaaacccctattgtgtattcctgcacctgtctccaTAATCCTTTATACCAACATGACATATATTGGTTGTGTTACCAGGATCCTAAATTGTAAAACAAGAAAGTTGTACACTCAATATATATACTCCAAACAATTGATTAAGTAGACCTAATAACCAACGTTTTGGTAACTGACTGTGCGACTTGATTTTTATACAGTTCAATCCTTGTTGGTTAGCGCCTCTACAAAACAATGTGTGCGTCAGCTCATGCTTTTTACTAAACAGGATCTTGAATTGGCATCACACATGCTAGACAGGCCAACAGTTTTGAAGTCACACTCCAACAGCACAGTGGCTGACTGTGGAATAAATAggaggttgctgaggggaggacggctcataataatggctgtaatggaacaaatgaaatggtatcaaacacatggaaactacgtgtttgatgtatttgataccattccactcattccgctccagccattaccagcaGTTAAAGTgcaaccaacctcctgtggtggaaTGAGACTGTCTTGCTGGTGGCAGGCATCAGGCCTTATTGACAACAGATACATGAAGTTACTCTGACATTATCCTGAGATATCAAATCaaacaaacataaaaatgttatacACAGGGCCTAGAGTGGGTAGTATAGTTACTCTGGACTCTAGGGCCTGATGGCTTGGGCTGGGATTCAATCTGTAGCGCATTGTAGCGCGCTTGACATTTTAAGGTACTTTCTGATTGAGCCAATATCTGCAGCGTTTACTGTGAATGTGATCTCAGCAAACacggaacattgcctttaaaaggcaCATTATCGTCAACAGCGCTCTACAACGAGCCTTTGATTGAATCCCGGCCTAGGCCACAGGAAGGACATTcactcattcttcttcttcttcatagTCTTCTTCGTTCCACAACACTTGCGGAAGCAGACTTTGCAGCATTTAACGGTGACCATGACAACAATGAGAACTATAGTGAGTAGCAGAGTGAACACGTCCAGACTGTGGTACTGGATCCAGTTGAGGTCGTGAGCGGCGGGTCTCAGGTGTTCCGCTCCGCCGTGACGCATCACAAACTCTGACCAGAACACGGCCAGGTCCAGGGGCTCGATGGGACGGTCCTTATGTACCGCTGACAGCTTCAGCATCTTCTCCTTGTA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2031763 lncRNA downstream 1288 9100196 ~ 9111482 (-) True G1774132
TU2031759 lncRNA downstream 2441 9098972 ~ 9110329 (-) False G1774130
TU2031753 lncRNA downstream 4508 9096980 ~ 9108262 (-) True G1774128
TU2031742 lncRNA downstream 30118 9082144 ~ 9082652 (-) True G1774122
TU2031741 lncRNA downstream 31222 9081059 ~ 9081548 (-) True G1774121
TU2031786 lncRNA upstream 10100 9133349 ~ 9135269 (-) True G1774139
TU2031801 lncRNA upstream 32134 9155383 ~ 9155838 (-) True G1774150
TU2031749 lncRNA upstream 33687 9156936 ~ 9158442 (-) True si:ch211-218d20.15
TU2031896 lncRNA upstream 205740 9328989 ~ 9332202 (-) True LOC110501351
TU2032039 lncRNA upstream 430775 9554024 ~ 9554342 (-) True G1774352
XM_021578845.2 mRNA downstream 49250 9047968 ~ 9063520 (-) False gpr161a
XM_036958648.1 mRNA downstream 52256 9044945 ~ 9060514 (-) False gpr161a
XM_021578833.2 mRNA downstream 159684 8941143 ~ 8953086 (-) False LOC110501339
XM_021578834.2 mRNA downstream 160817 8941143 ~ 8951953 (-) False LOC110501339
XM_036958640.1 mRNA downstream 261022 8827735 ~ 8851748 (-) True LOC110501335
XM_021578855.2 mRNA upstream 33670 9156919 ~ 9165142 (-) False si:ch211-218d20.15
XM_021578854.2 mRNA upstream 33670 9156919 ~ 9165150 (-) False si:ch211-218d20.15
XM_021578853.2 mRNA upstream 33670 9156919 ~ 9165305 (-) False si:ch211-218d20.15
XM_036958658.1 mRNA upstream 33670 9156919 ~ 9165305 (-) False si:ch211-218d20.15
XM_036958655.1 mRNA upstream 42155 9165404 ~ 9205109 (-) False med14
TU2031767 other downstream 9331 9101752 ~ 9103439 (-) False G1774133
TU2031716 other downstream 49569 9058976 ~ 9063201 (-) True gpr161a
TU2031541 other downstream 344723 8763292 ~ 8768047 (-) False LOC110502107
TU2031542 other downstream 344723 8763292 ~ 8768047 (-) True LOC110502107
TU2031468 other downstream 369737 8737179 ~ 8743033 (-) True LOC110501325
TU2031837 other upstream 166030 9289279 ~ 9291975 (-) True rpl8
TU2032076 other upstream 611993 9735242 ~ 9737856 (-) True fundc1
TU2035106 other upstream 2717824 11841073 ~ 11843059 (-) True G1777196
TU2035206 other upstream 2917859 12041108 ~ 12041622 (-) True G1777286
TU2035374 other upstream 3144968 12268217 ~ 12270114 (-) True G1777441

Expression Profile