RNA id: TCONS_00004906


Basic Information

Item Value
RNA id TCONS_00004906
length 2019
RNA type mRNA
GC content 0.44
exon number 10
gene id XLOC_002639
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 12648430 ~ 12652512 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCCACCGAGAGAACACCCTTGTGCTATTTTAGGATGTAAGGCTCAGCACAAGAGCCTTCACCGTCTTCCTGCAAATGAGCAACAGAGGCTTAAGTGGCTGAGTTTTATCTTTGAAGACAAGGTGCCTGAAAATGTACCAAAACTGTTGTATGTTTGCGCTAACCACTTTAGCGTAGACTGCCTCGAGAACGCGGGACAATATAACTCCGGATTCGCgagtaaattgtttttgaaaactggaTCAGTTCCTACAATACGTGATCCTGTCTCACTTCAAGCCACGATGTCGACAAAGAGCAACAAGGTGGATGTTGCTTGCCAGACAGAAACTTTTCACACATCTTTACACAGTGTTGGTACCCAGTTGTCTTTTAGGACGCTTCAGGCTAAACGCAGGAGTACAAGTGTCCAGACAACAATATCCAGTTTTGAACTGACTGTACCATCAGCGTCCTCTACTGCGTTTATGACTTCGACACCCCTCAAACCTTCACTAAAAAGACCTCGTCTggagctggaggaggaggaggaggaggaggaggaagaagaagcaGCAGCCGAAGAGACTTTGACAGAGTCAAAAATTATAGCCCAAGACTCGGATGTGACATTTGACCCTGCAGAGGAATGCACATCTGCAACTGAACCAACAGACTTGTCaatccAAGAATGCCCAGTTCATAACATTGCCAAGTTCATTGTCTATGAAACATGCCTCATGGAGCTCTTCAGTGACTGCCCAGTGTGTCAGAGGAGATGTGATGTAAAGTCACAAAGGCTTGGGACATTTCTGAGCGTACAGCAAGTCTGCCCACACTGCGAGTTTGTAAGAAAATGGAACAGTCAGCCAATTATTGGTAGTACTCCAGCTGGCAACCTGCATCTTTCTGCTGCTGTCTACTTGAGCGGTGCATCATTTTTTGTAGTTGAAAAGGTATTTGCTGCAATGaaactacacatttttaaatataattcatttcgCCGTCATGCAAGACTTTGCATTGAACCTgctattgtccacaagtggagaAATTGGCAGAGTGAAATGCTAGAACAGCTCAGTCGAAGAGAGAATGTGATTGTTGGAGGAGATATGAGGGCTGACTCCCCAGGTCACTCGGCCAAGTATGGGATTTATACAATGATGGACCTTGCAACTAACACAGTGGTCGACCTACAGTTAGTCCAGaGTAATGAGGTGGGTGGCAGTTACCATATGGAAAAAGAAGGCCTAAAGAGAAGCCTTGACCTGTTGGATGCCCGCGGTGTTCGTCTGGAATGCATCATCACAGACAGACATCCTCAAATACAGAAATATCTCAGGGATCGAAATGTCACTCAGTTTTACGATGTGTGGCATATCGAGAAAGGAATTTCCAAAAAACTGGACAAGATATGCCAGATAAAGGGGTGTGAGAAGTTGCGTAAATGGTTACGTAGCATCAAAAACCACATCTACTGGACTGCTGCATCATCCACAACAGGTCCTGAAAGAGTGGCAAAGTGGACCTCTATCTTAAACCATGTACAAGACAAACATGTACATGAAGACCCCAATTTTCCGGCTTGTCTGCATCCGCAACGGATAAGCAGAGACAAGAACAAATGGCTGTCGGCTGCAACGATGCCATTCTACAAGCTGGAGAAAGTTCTCGCTAACAAGAGAATATTGAAGGATGTGGCCAAGCTAAGTCCTCACCACCAGACGTCAACTGTTGAAGCTTTCCACAGCGTCATACTGCGGTTTGCACCCAAAAATGTGGTATTCCCATTTCTGGGGATGCTATGCAGgtTGTACTTGGCTGCACTTCATTACAATGAAAATGCCGGGCGTCCCCAGGCCACATCAGCAACTGGTAAACCTATTTACAAGCTTGCCTTTCCAAAGGCAAAGAAAGGAGAGTATAGGGTCCGAGAAGTGAAGACACAGCAAACTTTCggtatgtatataaatgtttatagtattattaataattcaataaataaaaaaaataattgcactttacaTTCACAATGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000169347

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006011 lncRNA downstream 750085 11895373 ~ 11898575 (-) True XLOC_002638
TCONS_00004895 lncRNA downstream 1315547 11331969 ~ 11333113 (-) False XLOC_002632
TCONS_00006010 lncRNA downstream 1861011 10784334 ~ 10787649 (-) True XLOC_002626
TCONS_00006009 lncRNA downstream 1934433 10712178 ~ 10714227 (-) True XLOC_002625
TCONS_00004883 lncRNA downstream 1934439 10712178 ~ 10714221 (-) False XLOC_002625
TCONS_00006012 lncRNA upstream 646327 13298839 ~ 13301973 (-) True XLOC_002642
TCONS_00006013 lncRNA upstream 2378494 15031006 ~ 15042748 (-) True XLOC_002656
TCONS_00006014 lncRNA upstream 2380460 15032972 ~ 15034960 (-) True XLOC_002657
TCONS_00004942 lncRNA upstream 2429898 15082410 ~ 15084047 (-) False XLOC_002660
TCONS_00004943 lncRNA upstream 2429898 15082410 ~ 15086297 (-) False XLOC_002660
TCONS_00004904 mRNA downstream 808307 11790881 ~ 11840353 (-) True XLOC_002637
TCONS_00004902 mRNA downstream 886733 11593998 ~ 11761927 (-) False XLOC_002636
TCONS_00004901 mRNA downstream 1251070 11394528 ~ 11397590 (-) True XLOC_002635
TCONS_00004899 mRNA downstream 1263505 11382365 ~ 11385155 (-) False XLOC_002634
TCONS_00004907 mRNA upstream 427580 13080092 ~ 13179077 (-) False XLOC_002640
TCONS_00004908 mRNA upstream 432462 13084974 ~ 13178853 (-) False XLOC_002640
TCONS_00004909 mRNA upstream 437644 13090156 ~ 13116337 (-) False XLOC_002640
TCONS_00004910 mRNA upstream 437644 13090156 ~ 13178920 (-) False XLOC_002640
TCONS_00004911 mRNA upstream 488649 13141161 ~ 13178986 (-) True XLOC_002640
TCONS_00004903 other downstream 884221 11761380 ~ 11764439 (-) True XLOC_002636
TCONS_00004879 other downstream 2316233 10319308 ~ 10332427 (-) False XLOC_002623
TCONS_00004880 other downstream 2319106 10329464 ~ 10329554 (-) True XLOC_002623
TCONS_00004869 other downstream 3110334 9534782 ~ 9538326 (-) False XLOC_002618
TCONS_00004859 other downstream 3506981 9141565 ~ 9141679 (-) True XLOC_002611
TCONS_00004913 other upstream 652553 13305065 ~ 13305183 (-) True XLOC_002643
TCONS_00004918 other upstream 954515 13607027 ~ 13607143 (-) True XLOC_002646
TCONS_00004919 other upstream 959621 13612133 ~ 13612248 (-) True XLOC_002647
TCONS_00004920 other upstream 1279057 13931569 ~ 13931696 (-) True XLOC_002648
TCONS_00004922 other upstream 1674314 14326826 ~ 14488154 (-) False XLOC_002649

Expression Profile

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