RNA id: TU2061410


Basic Information

Item Value
RNA id TU2061410
length 586
lncRNA type antisense_over
GC content 0.55
exon number 2
gene id G1801479
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 33142666 ~ 33143768 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttattgatgAGATGAGAATGTTGATATTTGCAGCCACTTTGCAGATGCCTCCCTGGCCCAGCCAGCGggactgcattccaaatggcaccctatttcctatttagtgagctacttttgaccatgtcctacaggccctatagagaatagggtgccatttgggacgaaaccCAGGAGTGGTTGGTCACCTGTAGGTTTCCTCCTAGCACAGGGGTGGGGTTGGGGCTGGGCGGGACTTGGGTGTCGGACCGCAGTAGGCTTTAACACACTCTTCCGGGATGGAGAGGAGCGCGTCTCTGCTTTCTTAGTCAGCTCAGTCTTCTTGTTCACGGCTTTTTTTCTTCTTGATGTCTTCCCTGGGGATACAGACAGTCTCCTTGCGGACGGGTTTACGTTCAGGGGTGGAGACGCACCCCTCGCGCCCCCTCACACGCCCGCTTTTAGCCTTGGGCTTCACTGGCTGCTTTTCCTGCTTCTGCTGCTGGAGAGTCTTGTACTTCTTGACTGGTGGGGCTGGGACCCGGTCGGCTGTCAGGGGCTCGATCTGCTCGGCAGCCATGCTCATGTCATCATCCACATCGACAGTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2061249 lncRNA downstream 182181 32958322 ~ 32960485 (-) False G1801331
TU2061251 lncRNA downstream 182181 32958322 ~ 32960485 (-) False G1801331
TU2061252 lncRNA downstream 182181 32958322 ~ 32960485 (-) True G1801331
TU2061257 lncRNA downstream 185162 32956998 ~ 32957504 (-) True G1801334
TU2061256 lncRNA downstream 185376 32956998 ~ 32957290 (-) False G1801334
TU2061483 lncRNA upstream 100802 33244570 ~ 33244783 (-) True G1801548
TU2061517 lncRNA upstream 122389 33266157 ~ 33266381 (-) True G1801582
TU2061521 lncRNA upstream 124178 33267946 ~ 33268155 (-) True G1801586
TU2061530 lncRNA upstream 134599 33278367 ~ 33278699 (-) True G1801595
TU2061534 lncRNA upstream 138567 33282335 ~ 33282592 (-) True G1801599
XM_021579601.2 mRNA downstream 260562 32855959 ~ 32882104 (-) True LOC110501778
XR_005038822.1 mRNA downstream 963661 32178642 ~ 32179005 (-) False LOC118943602
XM_021579537.2 mRNA downstream 1144315 31944574 ~ 31998351 (-) True ube2e3
XM_036959126.1 mRNA downstream 1144487 31944574 ~ 31998179 (-) False ube2e3
XM_021579538.2 mRNA downstream 1144521 31944574 ~ 31998145 (-) False ube2e3
XM_021579612.2 mRNA upstream 27474 33171242 ~ 33180375 (-) True LOC110501785
XM_036959590.1 mRNA upstream 257980 33401748 ~ 33509768 (-) True LOC110502092
XM_036959591.1 mRNA upstream 353896 33497664 ~ 33632178 (-) True LOC118936582
XM_021579613.2 mRNA upstream 543414 33687182 ~ 33927932 (-) True LOC110501786
XM_036959164.1 mRNA upstream 807285 33951053 ~ 33983297 (-) False LOC110502093
TU2061248 other downstream 182181 32958322 ~ 32960485 (-) False G1801331
TU2061278 other downstream 188996 32950467 ~ 32953670 (-) True G1801352
TU2060961 other downstream 364889 32759858 ~ 32777777 (-) True G1801071
TU2061092 other downstream 438343 32703800 ~ 32704323 (-) True G1801195
TU2058841 other downstream 2100450 31039193 ~ 31042216 (-) True LOC110501748
TU2063359 other upstream 1374738 34518506 ~ 34540173 (-) True bard1
TU2064031 other upstream 1982711 35126479 ~ 35126833 (-) True G1803964
TU2064375 other upstream 2063695 35207463 ~ 35219699 (-) True LOC110502094
TU2066167 other upstream 2914076 36057844 ~ 36059768 (-) True G1805927
TU2066409 other upstream 3433980 36577748 ~ 36578711 (-) True LOC110501806

Expression Profile