RNA id: TU2063442


Basic Information

Item Value
RNA id TU2063442
length 3185
lncRNA type intronic
GC content 0.41
exon number 3
gene id G1803393
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 34639972 ~ 34657362 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCGATTTGTTTTagcccatatcgtgcagcccatgtggcagtgtggaaatgatctcaaatgagtgtAGGAAATGCAGAAATGGATAAAAATGCAGAATGTTTTTTTTGGTTGAAGTTTAtttaaacagtataaaacaaatcaaaacagagagcgacccattgaaatcacttagaatgtatgtggTGCCACCCTAGGGTTACACACTACAAAGCCAAATGTAGAACTTGCATTATTCCAAAAACGTAAAATACAATGACATGATATTTTGTCCAGCCCTTAAAATCAGAATCATTGTAATCATTTAGACAGTAGGATCAAACCATGCATTGATGAATTAACTAATGGCTTCTTATCATTCATATAAATCACAACTACAGGCCTACATCAGGATTATGTGCCTAGTGCAAACCATTGGAACACTTAGATACTCTTTTTCTTTCACTCTTGATCCTTTCAGGTTTGCATGAAaatggtgtgtgcatgtgttattTAATTTCAATGTAAATACCCAGTATCCTTTTGGGTCACAGTGTAAAGGACCACTTGGCTGAGCAGAGCTTCATGTGTGGGGATCTTGTTAAGCCAAGTAaatgtttctttcatttaatcTTGTTGTTTTACTGCATGGTCGACTTTTGAAAGAACAGGTTGGTGTAGTAAAATAAAGTGCTTTCTAGAGGAGCGGCTCATTCCCCTTGAATCTAACCAGCCAATAACTCTACCACATTGTCCACAAGTTGTAGTAATACATACTGCCTTTCCTGTCGAGCTGATTCAACTCCCCAGTTAGTCATAGCCCACTGTTGTCTTTTGTGACTTGTAGATCTGATAATGGTAATCGAGGGAAATGGCTGAAGATTAAAATCAACACCATCCCAAATACTGGCCTAGGTACTCCTGAGCCCGCACTCATAaggcatctcagagtaggagtgctgatctaggatcaggttcccctGTTCATATGTTATTGTGATCCAAAGGCAACACTGATCCAAGATCAACACTCCTACTCGGAGGTGGCTTAAGAATGCAGGCCCAGTCCAGCACTAAATATTATGTGCCATCCAGTATCAACAGCAATAGTCCATCTAGAGCCCTCAAACTTAACTTTGGACCTCGaaaccagttccactgcatttttttcattgttaccctgtaatcagggactgatttagacctgggacaccaggtggatgcAATTCAtcatcaggtagaacagaaaaccaccaggctccggacctcgtaggacagttgaatacccctggtctaGAGTATGTTTCTATTACATAAACTGCCtttacaaagtattcataccccttgatttgttccacattttgttgtgttacggcAGCGTTTCTCAAACTCGGGTCCCAAGTGCCGAGTTTAGGAAACCCTGTGATACAatttgaattcaaaatgtattaaatagattcccctcccccctcacacatttacacgcaataccccataatgacaaggtgaaaacatgtttagacattcttgcaaatgtattgaaaattaaatacagaaatcaaATTTACATTAGTCACACCCCTTTGCCATGACACTCCAAATTAAGcgcaggtgcatccaatttcctttgatcaacCTTGAGACATCACTACAACTTGGGAGTCCACCTggggccaattcaattgtttggataTGTTTTAAAAAGAAACACCGGCCTATATAATgttcacacagttgacagtgcatatcagagcagaaacaatcatgaagtcgaaggaactgtccgtagctCTCCGAGatatatatctggggaagggtataaaacaatttctagagtgtTCTAGAGCTGGCCAGCCAACCAAAAGGAGCAATCGGACAAGAAggactttggtcagggaggtgaccatgaacccaATGACTAATCTGACAGaagtacagagttccttggctaaAATGGGataacctgccagaaggacaactatctctacagcacttcaccaatctgggctttaccGGACagtgaccagatggaagccactcctgagcaAAATTACTTTACGATCaagacacgcaggttgaaatatcaaaacggaCTCTGAAAAAACAATAttaaatttggggacaggtcgaaaagcattatatgtttagcaagctagcttgctgttgctagctaatttgtattAGCTagcatatgtaacagtataactttagaccatcccctcgcccatacccgggcgcgaaccagggaccctctgcacacatcaacagtcacccacgaagcatcgttacccatcgctccacaaaagccgagaGCAAGGGGAATATTATGTGCCATTCCTCATCCAGTAtgagagcaaggggaaccactacttcaaggtctcagagcaagtgacgtcaccgaagCTAACTTGTGTATTATCAATACCTTAAAAATCATTCAGGGTGGGTGGCAAGTGTCATACAGAATCTGAAAAACAGATGTATATAGTGACCGACTTTTCCAGCTATTTTCAACCCTGACTATGGCATTTCTTCCGTATTCAGTCATTGTGAAATGGAGTGACCGACAGGTTTGACGTGTGGCAGTGGTCTGGACTCGGTGGTCTCATGTTACACAAAGCAGGTGGttagtcaacaaaacaaagacgGAATGACCGGTCCAGATGGTCTGACAGGGACAGGAGGATTAAGATCAATGTATGAAGCGTTTGGTTTGGCCCATGACAGACAGCCACTTCTGGACCATTCAGAGAAACCGCCCCAATAAAGGGATTAatcacagcggttgcattaaggagaagtatatctttaattctgtgaataacagttgtatcttttatcaatgtttataatgagtatttctgtaaaatcaccaaatgttttggaatcaaaacattactgcacataacgtgccaatgtaaactgagattttttgatataaatatgcacattatcgaacaaaacatacatgtattgtgtaacatgatgtcctatgagtgtcatctgatgaggatcaaaggttagtgattaattttatctatatttctgctttttgtgactcctttctttggctggaaaaatgtctgtgtttttttgacttggctatgacctaacatgtatgttgtgctttcgctgtaaagcatttttgaaatcagacacaatAGGTAGATAAACAAGATGttcatctttcatttgctgtattggact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2063378 lncRNA downstream 55942 34583565 ~ 34584030 (-) True G1803329
TU2063399 lncRNA downstream 70098 34569622 ~ 34569874 (-) True G1803350
TU2063098 lncRNA downstream 184945 34454807 ~ 34455027 (-) True G1803089
TU2063086 lncRNA downstream 193305 34446334 ~ 34446667 (-) True G1803079
TU2063059 lncRNA downstream 217290 34422467 ~ 34422682 (-) True G1803052
TU2063448 lncRNA upstream 12477 34669839 ~ 34671292 (-) True G1803399
TU2063449 lncRNA upstream 14007 34671369 ~ 34672336 (-) True G1803400
TU2063491 lncRNA upstream 102553 34759915 ~ 34768728 (-) True G1803441
TU2063546 lncRNA upstream 131190 34788552 ~ 34790496 (-) True G1803492
TU2063577 lncRNA upstream 166351 34823713 ~ 34824011 (-) True G1803522
XM_021579617.2 mRNA downstream 47284 34585700 ~ 34592688 (-) True LOC110501791
XM_036959169.1 mRNA downstream 95740 34473620 ~ 34544232 (-) False bard1
XM_021579616.2 mRNA downstream 95740 34506539 ~ 34544232 (-) False bard1
XM_036959167.1 mRNA downstream 95767 34506539 ~ 34544205 (-) False bard1
XM_036959168.1 mRNA downstream 95767 34506539 ~ 34544205 (-) False bard1
LOC110502094 mRNA upstream 480968 35138330 ~ 35471205 (-) False LOC110502094
XM_021579628.2 mRNA upstream 1040224 35697586 ~ 35738804 (-) True LOC110501794
XM_036959179.1 mRNA upstream 1435826 36093188 ~ 36102895 (-) False tfcp2l1
XM_036959177.1 mRNA upstream 1435831 36093193 ~ 36102895 (-) True tfcp2l1
XM_036959193.1 mRNA upstream 1448685 36106047 ~ 36217789 (-) False LOC110502096
TU2063359 other downstream 99799 34518506 ~ 34540173 (-) True bard1
TU2061248 other downstream 1679487 32958322 ~ 32960485 (-) False G1801331
TU2061278 other downstream 1686302 32950467 ~ 32953670 (-) True G1801352
TU2060961 other downstream 1862195 32759858 ~ 32777777 (-) True G1801071
TU2061092 other downstream 1935649 32703800 ~ 32704323 (-) True G1801195
TU2064031 other upstream 469117 35126479 ~ 35126833 (-) True G1803964
TU2064375 other upstream 550101 35207463 ~ 35219699 (-) True LOC110502094
TU2066167 other upstream 1400482 36057844 ~ 36059768 (-) True G1805927
TU2066409 other upstream 1920386 36577748 ~ 36578711 (-) True LOC110501806
TU2066670 other upstream 2278296 36935658 ~ 36936087 (-) True G1806393

Expression Profile