RNA id: TU2063448


Basic Information

Item Value
RNA id TU2063448
length 1366
lncRNA type intronic
GC content 0.59
exon number 2
gene id G1803399
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 34669839 ~ 34671292 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcgagagcgagctagagagagagcgagagcgagctagagagagagcgagagcgagctagagagagagagagagagcgagctagagcgagagcgagctagagcgagagcgagctagagcgagagcgagctagagcgagagcgagctagagcgagaccgagctagagcgagagcgagaccgAGCTAGAGCGAGACcgagctagagcgagagcgagaccgagctagagcgagagcgagaccgagctagagcgagagcgagaccgagctagagcgagagcgagctagagcgagctagagagaggagagcaagctagagagaggagagcgagctagagagaggagagcgagctagagagaggagagcgagctagagagaggagagcgagctagagagaggagagcgagctagagagaggagagcgagctagagagagcgagctagagagagcgagctagagagagcgagctagagagagcgagctagagagagcgagctagagagagcgagctagagagagagcgagctagagagagagcgagctagagagagagcgagagcgagctagagagagcgagagcgagctagagagagagcgagagcgagctagagagagagcgagagcgagctagagagagagcgagagcgagctagagagagagcgagagcgagctagagagagagcgagagcgagagcgagctagagagagagcgagagcgagctagagagagagcgagagcgagagcgagctagagagagagtgagctagagagagagagagagcgagctagagagagcgagctagagagagagcgagctagagagagagtgagctagagagagagcgagagtgagctagagagagagcgagagcgagctagagagagagcgagagcgagctagagagagagcgagagcgagagcgagctagagagagagcgagagcgagagcgagctagagagagagcgagagcgagagcgagctagagagtgagctagagagcgagcgagagcgagctagagagagcgagagcgagctagagagagcgagagcgagctagagagagcgagagcgagctagagagagcgagagcgagctagagagagcgagagcgagctagagagagcgagagcgagctagagagagcgagagcgagctagagagagagcgagctagagagagcgagctagagagagcgagagcgagctagagagagagcgagagcgagctagagagagagcgagagcgagctagagagagagcgagagcgagctagagagagagcgagagcgagctagagagagagcgagctagagcgagagcgagctagagcgagagcgacctagagcgagagcgagctagagcgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2063442 lncRNA downstream 12477 34639972 ~ 34657362 (-) True G1803393
TU2063444 lncRNA downstream 17853 34644638 ~ 34651986 (-) True G1803395
TU2063378 lncRNA downstream 85809 34583565 ~ 34584030 (-) True G1803329
TU2063399 lncRNA downstream 99965 34569622 ~ 34569874 (-) True G1803350
TU2063098 lncRNA downstream 214812 34454807 ~ 34455027 (-) True G1803089
TU2063449 lncRNA upstream 77 34671369 ~ 34672336 (-) True G1803400
TU2063491 lncRNA upstream 88623 34759915 ~ 34768728 (-) True G1803441
TU2063546 lncRNA upstream 117260 34788552 ~ 34790496 (-) True G1803492
TU2063577 lncRNA upstream 152421 34823713 ~ 34824011 (-) True G1803522
TU2063579 lncRNA upstream 153650 34824942 ~ 34825240 (-) True G1803524
XM_021579617.2 mRNA downstream 77151 34585700 ~ 34592688 (-) True LOC110501791
XM_036959169.1 mRNA downstream 125607 34473620 ~ 34544232 (-) False bard1
LOC110502094 mRNA upstream 467038 35138330 ~ 35471205 (-) False LOC110502094
XM_021579628.2 mRNA upstream 1026294 35697586 ~ 35738804 (-) True LOC110501794
XM_036959179.1 mRNA upstream 1421896 36093188 ~ 36102895 (-) False tfcp2l1
XM_036959177.1 mRNA upstream 1421901 36093193 ~ 36102895 (-) True tfcp2l1
XM_036959193.1 mRNA upstream 1434755 36106047 ~ 36217789 (-) False LOC110502096
TU2063359 other downstream 129666 34518506 ~ 34540173 (-) True bard1
TU2061248 other downstream 1709354 32958322 ~ 32960485 (-) False G1801331
TU2061278 other downstream 1716169 32950467 ~ 32953670 (-) True G1801352
TU2060961 other downstream 1892062 32759858 ~ 32777777 (-) True G1801071
TU2061092 other downstream 1965516 32703800 ~ 32704323 (-) True G1801195
TU2064031 other upstream 455187 35126479 ~ 35126833 (-) True G1803964
TU2064375 other upstream 536171 35207463 ~ 35219699 (-) True LOC110502094
TU2066167 other upstream 1386552 36057844 ~ 36059768 (-) True G1805927
TU2066409 other upstream 1906456 36577748 ~ 36578711 (-) True LOC110501806
TU2066670 other upstream 2264366 36935658 ~ 36936087 (-) True G1806393

Expression Profile