RNA id: TU2064629



Basic Information


Item Value
RNA id TU2064629
length 207
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G1804534
representative True

Chromosome Information


Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 35523937 ~ 35535622 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atgtcacaaagtgctgtacagaaacccagcctaaaaccccgaacagcaagcaatgcagatgtagaagcatggtggctaggaaaaactccctagtaaggccggaacctaggaagaaactgtCACGAGAATTTTTCTCCCAATGGTTGAACTCAACTATCACTATAGCTTTGACCAATTCCCAGAAGTTTGTAAGACCCTGGTTAATGA

Function


GO: NA

KEGG:

id description

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2064544 lncRNA downstream 75271 35405231 ~ 35448666 (-) True G1804450
TU2063767 lncRNA downstream 577236 34946365 ~ 34946701 (-) True G1803709
TU2063755 lncRNA downstream 584908 34938824 ~ 34939029 (-) True G1803697
TU2063635 lncRNA downstream 658779 34864859 ~ 34865158 (-) True G1803580
TU2063605 lncRNA downstream 680763 34842934 ~ 34843174 (-) True G1803550
TU2064817 lncRNA upstream 90832 35626454 ~ 35627064 (-) True G1804710
TU2064943 lncRNA upstream 281782 35817404 ~ 35817865 (-) True G1804827
TU2064952 lncRNA upstream 288891 35824513 ~ 35828447 (-) True G1804836
TU2064956 lncRNA upstream 293209 35828831 ~ 35829042 (-) True G1804840
TU2065028 lncRNA upstream 341810 35877432 ~ 35877693 (-) True G1804902
LOC110502094 mRNA downstream 52732 35138330 ~ 35471205 (-) False LOC110502094
XM_021579617.2 mRNA downstream 931249 34585700 ~ 34592688 (-) True LOC110501791
XM_036959169.1 mRNA downstream 979705 34473620 ~ 34544232 (-) False bard1
XM_021579628.2 mRNA upstream 161964 35697586 ~ 35738804 (-) True LOC110501794
XM_036959179.1 mRNA upstream 557566 36093188 ~ 36102895 (-) False tfcp2l1
XM_036959177.1 mRNA upstream 557571 36093193 ~ 36102895 (-) True tfcp2l1
XM_036959193.1 mRNA upstream 570425 36106047 ~ 36217789 (-) False LOC110502096
XM_036959200.1 mRNA upstream 570425 36106047 ~ 36228083 (-) False LOC110502096
TU2064375 other downstream 304238 35207463 ~ 35219699 (-) True LOC110502094
TU2064031 other downstream 397104 35126479 ~ 35126833 (-) True G1803964
TU2063359 other downstream 983764 34518506 ~ 34540173 (-) True bard1
TU2061248 other downstream 2563452 32958322 ~ 32960485 (-) False G1801331
TU2061278 other downstream 2570267 32950467 ~ 32953670 (-) True G1801352
TU2066167 other upstream 522222 36057844 ~ 36059768 (-) True G1805927
TU2066409 other upstream 1042126 36577748 ~ 36578711 (-) True LOC110501806
TU2066670 other upstream 1400036 36935658 ~ 36936087 (-) True G1806393
TU2066735 other upstream 1507939 37043561 ~ 37112474 (-) True G1806449
TU2067385 other upstream 2224349 37759971 ~ 37760248 (-) True G1807020

Expression Profile