RNA id: TU2066109


Basic Information

Item Value
RNA id TU2066109
length 1769
lncRNA type intronic
GC content 0.38
exon number 2
gene id G1805874
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 35966389 ~ 35968196 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TtgtataatgttgtatgtttttcccccaacaccactttccatcaatttgtatagcagaccctcatgccaaattgagacAAAAGCCTTTTTTTAAAAAATCAACAACGCAtggaagactttgcctttgttttgttttgtttgtttgtaaattagaGTGTGCATGGTAAATACGTGGACTGTCGttacagtaatttggtaaaaagtacATTTGACAATTGCTCAGTAcaatgttttcattgaggaaatgtatgagtcagctgttaatgataatgcagaggattttcctaaggctgctgttgacgcatatcccccggtagttattggggtcaaatttgtctccacatttgtggattggggtgatcagtccttggttccaaatattggggaagatgccagagctgaggatgatgttaaagagttttaagTACAGCACATTGttatttgtggtctgtatatttgatcatttcattgaggataccataaGCCCCACAGGCCTTTTTAGATTGGAGGGTttctattttgtcctgtagttcattcactgtaattggagaatccagtgcgttctggtagtctttaaatcgaatcaaatcaaagtttatttgtcacatgcgctgaatacaacaggtgtagtagaccttacagtgaaatgcttacttacaggctctaaccaatagtgcaaaaaaggtgttaggtgaacaacagGTAGgtgaagaaataaaacaacagtaaaaagacaggctacatacagtagcgaggctataaaagtagtgaggctacatacagacaacgattagtcgggctgattgatgtagtatgtacatgtagatatggttaaagtgactatgcgtatatgatggaacagagagtagcagtagtgtaaaagaggggttggtgggtggtgggacacaatgcagattgcccggttagccaatgtgcggaagcactggttggtcggcccaattgaggtagtatgtacatgaatgtatagtatTTAGTAGTTTAGTAGTTGATTCTGCAATTTATATTTGATCATGTATGTGTTTGCTGTTTGTTCATTGTTATAGAGCGAAAAAGACtagagaagtggtttatccatacctcgccgttttggatagataactctttgttgtttgtttagattctatggattcttcaattacattgagctgatttctgatgtgctgctccttctttttccgtaatgtatttctgtattgttttagtggttcaccatagtgaaggcgtaggctcaggttttctgggtctctgtttttggttggatacaTTTCTCAATTTCCTTCTTAgctttttgcattcttcatcaaaccatttgtcattgctgTTAATTGTCTTAGGTTGTTTGCTTGAACTGTTTAGGTtttatagggaagctgagaggtaaaatatactgtttaggttttatagggaagctgagaggtaaaatatactgtttaggttttatagggaagctgagaggtaaactatactgtttaggttttatagggaagctgagaggtaaaatatactgtttaggttttctactgccaagtttacacattcactattacagtggcaccttttgtccaggaaattgtctagaagggattgaatttgttgttgcctaattgttttcttgtaggatgacaatgtctgtatttccaatttctttgatgaagtctgggttcctgctctttaggccaaaggcagatgacctcagaccttgtatattccaggatgagatagtaaaagctttgtgttccatattgtct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2065028 lncRNA downstream 88696 35877432 ~ 35877693 (-) True G1804902
TU2064956 lncRNA downstream 137347 35828831 ~ 35829042 (-) True G1804840
TU2064952 lncRNA downstream 137942 35824513 ~ 35828447 (-) True G1804836
TU2064943 lncRNA downstream 148524 35817404 ~ 35817865 (-) True G1804827
TU2064817 lncRNA downstream 339325 35626454 ~ 35627064 (-) True G1804710
TU2066119 lncRNA upstream 12638 35980834 ~ 35981083 (-) True G1805882
TU2066129 lncRNA upstream 34944 36003140 ~ 36004304 (-) True G1805892
TU2066131 lncRNA upstream 36775 36004971 ~ 36005376 (-) True G1805893
TU2066135 lncRNA upstream 44786 36012982 ~ 36013189 (-) True G1805897
TU2066144 lncRNA upstream 65237 36033433 ~ 36033806 (-) True G1805906
XM_021579628.2 mRNA downstream 227585 35697586 ~ 35738804 (-) True LOC110501794
LOC110502094 mRNA downstream 495184 35138330 ~ 35471205 (-) False LOC110502094
XM_021579617.2 mRNA downstream 1373701 34585700 ~ 34592688 (-) True LOC110501791
XM_021579616.2 mRNA downstream 1422157 34506539 ~ 34544232 (-) False bard1
XM_036959168.1 mRNA downstream 1422184 34506539 ~ 34544205 (-) False bard1
XM_036959179.1 mRNA upstream 124992 36093188 ~ 36102895 (-) False tfcp2l1
XM_036959177.1 mRNA upstream 124997 36093193 ~ 36102895 (-) True tfcp2l1
XM_036959193.1 mRNA upstream 137851 36106047 ~ 36217789 (-) False LOC110502096
XM_036959200.1 mRNA upstream 137851 36106047 ~ 36228083 (-) False LOC110502096
XM_036959201.1 mRNA upstream 137851 36106047 ~ 36228083 (-) False LOC110502096
TU2064375 other downstream 746690 35207463 ~ 35219699 (-) True LOC110502094
TU2064031 other downstream 839556 35126479 ~ 35126833 (-) True G1803964
TU2063359 other downstream 1426216 34518506 ~ 34540173 (-) True bard1
TU2061248 other downstream 3005904 32958322 ~ 32960485 (-) False G1801331
TU2061278 other downstream 3012719 32950467 ~ 32953670 (-) True G1801352
TU2066167 other upstream 89648 36057844 ~ 36059768 (-) True G1805927
TU2066409 other upstream 609552 36577748 ~ 36578711 (-) True LOC110501806
TU2066670 other upstream 967462 36935658 ~ 36936087 (-) True G1806393
TU2066735 other upstream 1075365 37043561 ~ 37112474 (-) True G1806449
TU2067385 other upstream 1791775 37759971 ~ 37760248 (-) True G1807020

Expression Profile