RNA id: TU2066129



Basic Information


Item Value
RNA id TU2066129
length 448
lncRNA type intronic
GC content 0.71
exon number 2
gene id G1805892
representative True

Chromosome Information


Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 36003140 ~ 36004304 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggcgggcgtggtgctggtcaggcaccgtgttatgcagttgtgcgcacggtgtccccagtacgcgtgcttagcccagtgcgctacatcccagctccccacatctgccgggctagggtgaagatccagccagggcggttggtgccagccctgccctcaagatctccagtacgccttcacggtccggtctatccgtcaccacctccacgcaccagccctccggtggcagccccccgtaccaggctgtctctccggcccatccttacaggggcttcctcctctccagcgctgccggagcctcccacctgtccggcgcctctgccggaacctctcgcctgtccggcgccgctgacagagcctcccgcctgtccggcgcgaccggagcctcccgcctgtccggcgcctctgccggagcctcccgcctgtccggcgccgctgccggagcctcccg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2066119 lncRNA downstream 22057 35980834 ~ 35981083 (-) True G1805882
TU2066109 lncRNA downstream 34944 35966389 ~ 35968196 (-) True G1805874
TU2065028 lncRNA downstream 125447 35877432 ~ 35877693 (-) True G1804902
TU2064956 lncRNA downstream 174098 35828831 ~ 35829042 (-) True G1804840
TU2064952 lncRNA downstream 174693 35824513 ~ 35828447 (-) True G1804836
TU2066131 lncRNA upstream 667 36004971 ~ 36005376 (-) True G1805893
TU2066135 lncRNA upstream 8678 36012982 ~ 36013189 (-) True G1805897
TU2066144 lncRNA upstream 29129 36033433 ~ 36033806 (-) True G1805906
TU2066148 lncRNA upstream 32649 36036953 ~ 36037154 (-) True G1805910
TU2066154 lncRNA upstream 41051 36045355 ~ 36045601 (-) True G1805916
XM_021579628.2 mRNA downstream 264336 35697586 ~ 35738804 (-) True LOC110501794
LOC110502094 mRNA downstream 531935 35138330 ~ 35471205 (-) False LOC110502094
XM_021579617.2 mRNA downstream 1410452 34585700 ~ 34592688 (-) True LOC110501791
XM_021579616.2 mRNA downstream 1458908 34506539 ~ 34544232 (-) False bard1
XM_036959168.1 mRNA downstream 1458935 34506539 ~ 34544205 (-) False bard1
XM_036959179.1 mRNA upstream 88884 36093188 ~ 36102895 (-) False tfcp2l1
XM_036959177.1 mRNA upstream 88889 36093193 ~ 36102895 (-) True tfcp2l1
XM_036959193.1 mRNA upstream 101743 36106047 ~ 36217789 (-) False LOC110502096
XM_036959200.1 mRNA upstream 101743 36106047 ~ 36228083 (-) False LOC110502096
XM_036959201.1 mRNA upstream 101743 36106047 ~ 36228083 (-) False LOC110502096
TU2064375 other downstream 783441 35207463 ~ 35219699 (-) True LOC110502094
TU2064031 other downstream 876307 35126479 ~ 35126833 (-) True G1803964
TU2063359 other downstream 1462967 34518506 ~ 34540173 (-) True bard1
TU2061248 other downstream 3042655 32958322 ~ 32960485 (-) False G1801331
TU2061278 other downstream 3049470 32950467 ~ 32953670 (-) True G1801352
TU2066167 other upstream 53540 36057844 ~ 36059768 (-) True G1805927
TU2066409 other upstream 573444 36577748 ~ 36578711 (-) True LOC110501806
TU2066670 other upstream 931354 36935658 ~ 36936087 (-) True G1806393
TU2066735 other upstream 1039257 37043561 ~ 37112474 (-) True G1806449
TU2067385 other upstream 1755667 37759971 ~ 37760248 (-) True G1807020

Expression Profile