RNA id: TU2066831


Basic Information

Item Value
RNA id TU2066831
length 2866
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G1806539
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 37218976 ~ 37221865 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTTGATAAAAAAGTTCATTTTAACTAGGTAGTTCtcattttacatcaatttcccaTAAAACATATTTATCTTTCTTCTTGATAAATTAAAAAGTTGTATTAGTCATGCAGTTTCGCATTTCCCTTTTGAATTTTATCTTTCCCAAAAATAACAAGAACACAATCTTATTGAACTCCAACGAAGCCGCTAAGTAGCCGAGGGAGGAAAAGCATCAACATGCAGCACTGTACACATTTGCATAGtacatttctctttttctctaGATTAGTTTGTCCAATTGTTTTTCTCTTTACCAGCATGCCTTTATAGAACACAGCACTAACAGAAATCAAGCTATCTTGGCAACAGAAGAAGGTATTCGaagaaaacaaataaaatatgtTGTGATTTGTTTGGTTGGGGGTTTCTGATACATACCCTCTATTGGTGATCTATGCATAACTGGTAGCATACAGAGAGACATTCTCTGACATGAACCTCTATACAGAACTCCCTAGTCTGTAcccttcacactctcttcatATGACTAAACCTCTATAATTGTTCCTAACCATTTAGACCATAAAAACTGTGAAATAAAATGCTACATTTTGAGGATATGTATATGGATAGGAGAGAAGCCCCTCCATTGCTACAGTACCCCCCAAAAAAGTTTAAAACAAGGCCTGGGTTAAGCAATAAGGCTTTGAACAATTCATTTGTCATGGTGTTTTGATATGCAATGCTTAGGAAAGTAAAATCGTTCATTAAAAAAcaacattatttatttttaatggcCAGGACATGGAAGACTTTTAAATGGGGCATTGAAAAGAAGAGCTGATGGttggcaaataattacaattaattGATTTGACTTATATATCGCCTTTCTAGAcacacaaagtgctttacatagTAATTATGACCAAAGAAAACCATTTCTTTGTTTCATGAAATCAACAATATAACTTCATAGCAGACTGAATGAAGCGCTCTCATCCGCTTATGTGTTACTGTTGACTAAATTAATTGTTCAATTGAGACTGTCCTAAACAACAGTCACTCACTCAACTACAGTCTCCTAGGGATTTTTCTGGCCTAACACATACATAACAGCACTGAATCATTATTccatgacatactgtatattgacAAAAAGACATGCTGCCATTGATCATTCTAAACCAATGAAACGTCGGTCCACGGACAGACGTTATTTCTTTACTTGCCAAGCAGGACTTTCTTTGAATATATTACACTTGAATTCACAAGACCATTTAAAAGACAATAAAATATGATGCAAATGGCATCACTATAACAGGCTGCATGTACAGTAAATGGAATGGGGTATACCTCAATTCAAATGATCAATATTTCCCTGATTGGAAGTATATCCATCTATACTAAAGCCTATCCTTCGATCATTAGTCAATTATGAAACCCATTTAAACAGTTAAAATTAAGCTCAATGGGCATATCatccctctctactgtatattttATTCCTAGTCATGAGTACTAATGGAAAAACTTAAATTAGGCTATTTCCTTTGGTTGCAGCATACTAAAAACTGATAGGAATAGTCCTCACACTAGAGTGTACTGTATATAACGAAGGGACGCACCCTTTCCTGAAAGAGCACAAGATATGAAACTTGCAACTCACTTAATTTACTTAGCAAATTTTCATTACAAAAGTGTGATTTCTTGTCCTGTGCGGCACGtcgcaattattattattttttaaacctttatttaactaggcaagtcagttaagaacaaattcttattttcaatgacagcctacgaacagtgggttaactgccagttcaggggcagctcggggatttgaactctcggttactagtccaatgctctaaccactaggctaccctgccgccctaatGGCATTAGCTAAGTATCATTGAGGAGAAGAAGGGGATAAAAGCCCTGGAAACTAGAAGATTCCGATTCAGGACCCCGCTAGAAAAATCCCTCAACATTTTGACAAACAGGAACTTTGCCGACTCTGAGAAACTGGTTGTAGGCTACAGGACTGAAAACACTCAAATCCAAGACAATTTCAAACAACTTAGTGACATTAATTAAATATACAGTGCACTGACTCTGCTGCTATTGGCTCCTGGAAATGTGCAAAGAAGTTCTGTGCTGATCAAGGGACGCTTGACGCTGTCTGGCACTGGTTCGAGGCAGGTGTTGATGGGTCACCAAGACCACCACGACAGCTAGCCCTGCTAACACTGAGACAACAGGGAGTCGATGGCCAGACCACATGGCCACCCCTTTCACACCAACATGTCAAGGCCTTGCCATGTTAAAAAGAAGACAAGCCCAGAGTTGGGCCTTCCCTTAGAAAAAAACCATGGTGAAAATCTGCCCCTCATCCTATTTTTTGTCTCCCTCATAAGAAAAAGGCATAGAGATTAGATTTTTAGTTGGTCAATGTTCACGTTTTCACCGTGAACCAGTGCCAGAGGAAAAGCGAGGTACTAACACATTATAAAAAAAGTTGGTTACAGTACAATTAAACTAGAGAGTGGTCGTGTGGCTGTGTCGTACCCACTGTGAAGGGAAGAGAAGCCTAAGTGACATAAGGGGGTCTTCAGCTCAAAGCCTGTGCCTGGAGTCATGACTGTAGCTTCCGGGGGAGCCGTTACGGTTGCGGTGGGGCTTGTACGTGTCCTGATAGGGGTCATGATAATTCTCCTCCACCAGGGGGTAGTGGACCTGGTCCCGGCTGTGCTGCGAGCCGGAGGACAGGCGGTTACGGCTCTTCCTCTGCCGCTCATTGTGGTAGTTCTCGTCTGATGGCGAGTGTTCTCCTGCTGTGTGATTGCTGTTCCTGTTTGTGTTTCTTTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2066827 lncRNA downstream 26920 37191055 ~ 37192056 (-) True G1806535
TU2066797 lncRNA downstream 67114 37151656 ~ 37151862 (-) True G1806511
TU2066682 lncRNA downstream 246036 36962661 ~ 36972940 (-) True G1806403
TU2066678 lncRNA downstream 273518 36944865 ~ 36945458 (-) True G1806401
TU2066672 lncRNA downstream 279306 36939401 ~ 36939670 (-) True G1806395
TU2066852 lncRNA upstream 9455 37231320 ~ 37232061 (-) True G1806558
TU2066896 lncRNA upstream 67253 37289118 ~ 37293571 (-) True G1806590
TU2066922 lncRNA upstream 125647 37347512 ~ 37349257 (-) True G1806609
TU2067005 lncRNA upstream 254098 37475963 ~ 37482618 (-) True G1806686
TU2067007 lncRNA upstream 254471 37476336 ~ 37483685 (-) True G1806687
XM_021579645.2 mRNA downstream 101139 37105485 ~ 37117837 (-) True hacd2
XM_036959224.1 mRNA downstream 119355 36980096 ~ 37099621 (-) True LOC110501809
XM_036959226.1 mRNA downstream 120671 36980096 ~ 37098305 (-) False LOC110501809
XM_036959221.1 mRNA downstream 381393 36552698 ~ 36837583 (-) False LOC110501806
XM_021579653.2 mRNA upstream 136279 37358144 ~ 37390316 (-) True LOC110501816
XM_021579657.2 mRNA upstream 177205 37399070 ~ 37411510 (-) True LOC110501817
XM_036959231.1 mRNA upstream 211068 37432933 ~ 37524672 (-) False LOC110501818
XM_036959232.1 mRNA upstream 211068 37432933 ~ 37524677 (-) False LOC110501818
XM_036959233.1 mRNA upstream 211068 37432933 ~ 37528625 (-) False LOC110501818
TU2066735 other downstream 106502 37043561 ~ 37112474 (-) True G1806449
TU2066670 other downstream 282889 36935658 ~ 36936087 (-) True G1806393
TU2066409 other downstream 640265 36577748 ~ 36578711 (-) True LOC110501806
TU2066167 other downstream 1159208 36057844 ~ 36059768 (-) True G1805927
TU2064375 other downstream 1999277 35207463 ~ 35219699 (-) True LOC110502094
TU2067385 other upstream 538106 37759971 ~ 37760248 (-) True G1807020
TU2068246 other upstream 971557 38193422 ~ 38195096 (-) True G1807750
TU2068217 other upstream 986925 38208790 ~ 38213187 (-) False G1807731
TU2068420 other upstream 1354001 38575866 ~ 38612287 (-) True LOC110502145
TU2068897 other upstream 1722271 38944136 ~ 38944530 (-) False G1808299

Expression Profile