RNA id: TU2068053


Basic Information

Item Value
RNA id TU2068053
length 511
lncRNA type antisense_over
GC content 0.54
exon number 2
gene id G1807587
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 37864964 ~ 37866937 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATGTGTCCCTCCTGTGGCCCTAGTATGagtaagaatgtgtgtgtgtgttacctgaggcgGTGGATGTTCTACGGAGCAGGTTGGGGTGTTGTTTGCTATGGGTCCCAGAGCCGTGGATGGAATGTGCTGGGCTGGTCCAGCTCCTACGCTCCCCAGTGGTTGACATCAAAGCCACATCCGGTTTCTCTGTCACCGAGGGAGGCCGCCCCTCCTCTTTATTGAAGCGGAACAGGTTGACGAAGGAGCTGTAGGCTGATCGGAGCGGAGGCTCGTCCTGCTCTGGAGTCAGGGGTTTGAAGTGTGTCAGGTGAGAAGGGCTGCCAGGGGAGATGGGAGGCTTCACACTGCAATCCAGCGTAGAGGAGGAGGATTTGTCCTCAGCCTCCATGTCACTGCTCCTGTTGGAAAGACAAATGATCTCTTGGTGAGACCAGAACATTGTGGTCACGTCATGGTGATCCTCTGCTTGATCGTGTGATAACAACTAGGCCTAAACAACTAGGCCTAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2067466 lncRNA downstream 11332 37851930 ~ 37853632 (-) True LOC110501831
TU2067459 lncRNA downstream 14590 37850101 ~ 37850374 (-) True G1807075
TU2067458 lncRNA downstream 16196 37848033 ~ 37848768 (-) True G1807074
TU2067395 lncRNA downstream 90440 37774208 ~ 37774524 (-) True G1807030
TU2067383 lncRNA downstream 105829 37758858 ~ 37759135 (-) True G1807018
TU2068058 lncRNA upstream 5830 37872767 ~ 37873860 (-) True G1807588
TU2068078 lncRNA upstream 60900 37927837 ~ 37928265 (-) False G1807607
TU2068079 lncRNA upstream 60900 37927837 ~ 37928265 (-) True G1807607
TU2068148 lncRNA upstream 203929 38070866 ~ 38072483 (-) False G1807673
TU2068152 lncRNA upstream 203929 38070866 ~ 38072052 (-) True G1807673
XM_021579670.2 mRNA downstream 4056 37851828 ~ 37860908 (-) False LOC110501831
XM_021579996.2 mRNA downstream 24288 37839001 ~ 37840676 (-) True LOC110502128
XM_036959075.1 mRNA downstream 29792 37834053 ~ 37835172 (-) True LOC110502140
XM_021579995.2 mRNA downstream 33479 37830542 ~ 37831485 (-) True LOC110502127
XM_021579661.2 mRNA downstream 64873 37798979 ~ 37800091 (-) True LOC110501821
XM_036959262.1 mRNA upstream 36211 37903148 ~ 37939168 (-) False LOC110502141
XM_036959258.1 mRNA upstream 36211 37903148 ~ 37967285 (-) False LOC110502141
XM_036959259.1 mRNA upstream 36211 37903148 ~ 37967285 (-) False LOC110502141
XR_005038831.1 mRNA upstream 36211 37903148 ~ 37967285 (-) False LOC110502141
XM_036959261.1 mRNA upstream 37974 37904911 ~ 37967285 (-) True LOC110502141
TU2067385 other downstream 104716 37759971 ~ 37760248 (-) True G1807020
TU2066735 other downstream 752490 37043561 ~ 37112474 (-) True G1806449
TU2066670 other downstream 928877 36935658 ~ 36936087 (-) True G1806393
TU2066409 other downstream 1286253 36577748 ~ 36578711 (-) True LOC110501806
TU2066167 other downstream 1805196 36057844 ~ 36059768 (-) True G1805927
TU2068246 other upstream 326485 38193422 ~ 38195096 (-) True G1807750
TU2068217 other upstream 341853 38208790 ~ 38213187 (-) False G1807731
TU2068420 other upstream 708929 38575866 ~ 38612287 (-) True LOC110502145
TU2068897 other upstream 1077199 38944136 ~ 38944530 (-) False G1808299
TU2068898 other upstream 1077199 38944136 ~ 38944530 (-) True G1808299

Expression Profile