RNA id: TU2068979


Basic Information

Item Value
RNA id TU2068979
length 1756
lncRNA type intronic
GC content 0.44
exon number 4
gene id G1808352
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 39071813 ~ 39074774 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGAAGTGTGATGTTGTCTTGATGTTCCTGGTTGAATACTTGTGAATTCACCACCTGCACCATTTCCTTTGATAATCAGATCCTTGTTGGAATATTTCATATAGGAATGCTGTTTGACCATTCATccttcccttctcccttcctTGGAGTAATCACTGATCTACCATGGTTGTGTAGGTGAACACGACGATTCCACTACTGTGCTTAGCCTGCACCACCCATTTCTGTCAAGTCAGATCAGTAGTAACTCTGAAGGAAGGAAAGGATAGAAGGAGGCCTTTTCAACGTATTAGAACAGAGCAAAAGACTCAGGAAGCCATTCAGTTAGCCATTCAGTTAGCCATTCAGTTAGCCATTCAGTTAGCCATTCAGTTAGCCATTTAATGGGAGAGTAGATGTTGTGGTAACTATGGAAGAGAAGAAGTAGGCATTGGTGGCGTCAGCGACATGGTATGAGGGGGGAGTTGTCGGATAGGGgagttgtcagacagaagagttgtcAGATAGGAGAGTTGTCAGGCAGAAGAGTTGTCAGataggagagttgtcagatagaagagttgtcagataggacagttgtcagacagaagagttgtcagataggagagttgtcagacagaagagttgtcGGATAGAagagttgtcagacagaagagttgtcagataggagagttgtcagacagaagagttgttggataggagagttgtcagataggagagttgtcagacaggagagttgtcagacagaagagttgtcagataggagagttgtcagacagaagagttgtcagataggagagttgtcagacagaagagttgtcggataggagagttgtcagacagaagagttgtcagataggagagttgtcagacagaagagttgtcggataggagagttgtcagacagaagagttgtcGGATAAGATAGTTGTCAGACAGAAGATTTGTCGGATAGAAGAGTTGTCAGATAGGAGAGTTGTAAGATAGGAGAGTTATCAGATAGGAGAGTTGTCAGACAGAAGAGTTATCGgataggagagttgtcagacagaagagttgtcggataggagagttgtcagacagaagagttgtcGGGTAGGAGAAttgtcagacagaagagttgtcggataggagagttgtcagacAGAAAAGTTGTCAGACAAGAGAGTTGTCagataggagagttgtcagacagaagagttgtcAGATAGGAGAGTTGTTGGACAGGAGAGTTGTCagataggagagttgtcagacagaagagttgtcagacagaagagttATCGGATAGGAGAGTTGTCGGACAGAAGTGTTGTCATACAGGAGAGTTGTCagataggagagttgtcagatagaagagttgtcagataggagagttgtcagacagaagagttgtcagataggagagttgtcagacagaagagttgtcagataggggagttgtcagacagaagagttgtcAGATAGGATAGTTGTTAGACTGAAGAGTTGTCagataggagagttgtcagaaagaagagttgtcagataggagagttgtcagataggagagttgtcagacagaagagttgtcggataggagagttgtcagacagaagagttgtcGGATAGGAGTCTTGTCAGACAAAAGAGTTATCGGATAGGTgagttgtcagacagaagagttgtcagacagaagagttgtcagataggagagttgtcagacagaagagttgtcAGATAGGAGAGTTGTTGGACAGGAGAGTTGTCagatagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2068970 lncRNA downstream 12377 39059103 ~ 39059436 (-) True G1808343
TU2068934 lncRNA downstream 82211 38981662 ~ 38989602 (-) True LOC118943609
TU2068932 lncRNA downstream 82289 38980554 ~ 38989524 (-) False LOC118943609
TU2068913 lncRNA downstream 83117 38981662 ~ 38988696 (-) False LOC118943609
TU2068926 lncRNA downstream 83852 38978579 ~ 38987961 (-) False LOC118943609
TU2068982 lncRNA upstream 7050 39081824 ~ 39086829 (-) True G1808353
TU2068992 lncRNA upstream 17973 39092747 ~ 39094577 (-) True G1808362
TU2069005 lncRNA upstream 33565 39108339 ~ 39123554 (-) True G1808367
TU2069031 lncRNA upstream 91646 39166420 ~ 39229856 (-) True G1808385
TU2069112 lncRNA upstream 235483 39310257 ~ 39310489 (-) True G1808451
XR_005038835.1 mRNA downstream 91787 38978507 ~ 38980026 (-) False LOC118943609
XM_021579702.2 mRNA downstream 142072 38899484 ~ 38929741 (-) False LOC110501854
XM_036959592.1 mRNA upstream 354898 39429672 ~ 39436466 (-) True LOC110502146
XM_036959076.1 mRNA upstream 362425 39437199 ~ 39441516 (-) True LOC118943588
XM_021579710.2 mRNA upstream 515255 39590029 ~ 39680169 (-) True ramp1
XM_036959294.1 mRNA upstream 608446 39683220 ~ 39731113 (-) False LOC110501861
XM_036959297.1 mRNA upstream 608446 39683220 ~ 39731113 (-) False LOC110501861
TU2068897 other downstream 127283 38944136 ~ 38944530 (-) False G1808299
TU2068898 other downstream 127283 38944136 ~ 38944530 (-) True G1808299
TU2068420 other downstream 459526 38575866 ~ 38612287 (-) True LOC110502145
TU2068217 other downstream 858626 38208790 ~ 38213187 (-) False G1807731
TU2068246 other downstream 876717 38193422 ~ 38195096 (-) True G1807750
TU2070925 other upstream 1661874 40736648 ~ 40813387 (-) True LOC110501878
TU2071828 other upstream 2373125 41447899 ~ 41465647 (-) True LOC110501886
TU2071948 other upstream 2530200 41604974 ~ 41605231 (-) True G1811042
TU2073040 other upstream 3312048 42386822 ~ 42389273 (-) True G1812079
TU2073346 other upstream 3529929 42604703 ~ 42605020 (-) True LOC110502155

Expression Profile