RNA id: TU2073040


Basic Information

Item Value
RNA id TU2073040
length 2432
RNA type TUCP
GC content 0.41
exon number 2
gene id G1812079
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 42386822 ~ 42389273 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGCTTTGTGATTGAATTAGGTCAGATTCCATTTTGTACCCTATTTACCATAACAACGTTTGGAGGAAGACGGGACGTAGTTTCACACCACGTAATGAATGTTTCTACTTCATCAGAATACACAGCACCACCCATCCTTGGTCTGTACATGCTTATACACACATGTACCAACAAATGCAAACACACATACCGTATTCAAAGCCCCAAAAAATGTGTGTGAACGGAAGAAAGAGAATGGTTGTGATAGAGGTTATGTAGCACGGAAACATCTGGAAAATATGAATTATTTTTCAAAAAGAATGTTTGGTTTTATTAAACATATATTCATAATATACCTGTACAATTATAGCCATACAAAATTGGCCCTCAAAGTAATCACAATATCAACAAGTACAAATAGGAGTCTCAGAGGTGAATTATAACTTGCTTTCAAGGACACTTTAATTTGAAAGAAAAATGTTTTCAGGCAATACCTCAGCCAATCTTATTATTTTGTGACGGTGTGTATATGAATTGTTGCTCATGAAAGAGTTTTACGTATGAATTTTCATTCTCTGTTTTTATTGTTTCTAAACTGTCAAACTGGGTAATTTTGCACTGATGATACTTTCCCTCTTCATTTTAGGTGGAAAATAAAACTAAGCTGAGCATCCACATCCATCATCCAATACCAGTAAACACTAATCACCTTATAATGTAGATCTAACATAGGGATACTGTTGACAATCAGTACAAAAGCAATGAATTACAAACTTCAAATAAGAAATAAGATATAAAATGGTCACCAATGCATGACCAGGATCAAAGGTGTGCCAGAACAAATGGCTGCTTGAGGAAGCAATCCAAACGAAACAATGAAAAGTACCAAGAAAAGACAAAGAGCTTATGAGAAGATGAGGAACAACTAAAGCTTTGTATATGGCAGCTCTTTGAAGACTCTTCTAACCCTTGGCCGGCAGCCACTTGAGTGGGATGTGATGGGTTGGTTCTCTTGCTAGGGGACAGCTAGCAGATGTTCCAGTCAGCTGGGTTCTTTTTACAGTCTCTTCCTTGCAGCAATACAAAGCATCCTAGCCTACGGCATAGAAACCTCAAGAACATTGGGCAGAAAGAACAATGATTTTCAATTTTCCAAAGAAAAATGTAGGAAACCGGTCCAGGCACCTGTCTCTTGTATTGATGTAATTTTTAAATGGCTTTATTTAGGGATTTAATGAAATTTAAATATATAACTTTTTGTATTTAATCTTAATTAATCACTGCATTATCAAGATCAGTAAAACAATACTTATCTTATTCCaatgtgttatttaatattaTGTTATCTAAGAAGGCCTTTGCATTGAGCCTTTTCAACCATTCCCAGAGCACTGCACTGCGGTACTGTAATTACCATCAAAATGGTGGCTGAATAGTCTCCCTGCCCTCTGAAGGCAACCCACTCTGTATTGACCCTCTGTATTACATCAATGGCACAGATGTGAAAGCTGTTGAACTTCTCGTCCTTTTCGTAAGTATTTGAAATGGAGTAAGTGCATCTGTGTGTAGTTTCTGTGCGTCAGGAGATTTCTTCCCCACACGACAGTGGGATAGTTTAATCTTGGCCATCTACACCATTGTGGCTTTTTCCCATAACATTGCCCACTCTTCCCATAACATTGACCACTCTTCCATAACATTGACCACTCTTCCCATAACATTGACCACTCTTCCCATAACATTGCTCAATCTTCCATAACATTGCTCACTCTTCCATAACATGGCCCACTTTTACCATAATATTGACCACTCTTCCCATAACATTGACCACTCTTCCATAACATTGCCCACTTTTACCATAACATTGAATATTCTAATCTTTCCAGACTCTTTGTATTTCTGTCATTGGATAAATCCATTGCACCATATCCATATGCTTCAATCTCTTATGGCACTGTTTTCCTGTCCCATCACCACCATTTGTGAGCCGGCCGGTCAACATATTTGCAGCTACAAGTCCCGTCCTACGGAGTATCTACACAGAAACGGGAAGAAATTCCCCATCAGGATATTCCCACAGTTCCCTAAAGGAGAAGGAATTCTTAATTTCTACCCCAGAGGAGGGAGGAAAAAGGCTGCCTCCTCCTGTGCAGACAGCTAGACAAAACAGAAGAGAGGtaagcggcgatggctagaaggcttGGCTGGACACTGTGGTCAGATATAGTACTCCCTGTTGTCCCTGAGGGTGGAGCTATGACTGTCATGGAGGTGGCACTCTGTCCTGTAGGCTGGTTCTGCCTGGTAGGCTGCTTCTCTCCGGCAGGCTATTTCCAGGTTGGTTTGGTGCTCCTTCTCCTTGATGCTGGCGTCTCTCCGGGCCTGCCGGTGCTGGTACAGGAAACGggtcatcaccaccactacacaCAGAGTGATGAAGATTACTGCTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2072826 lncRNA downstream 142985 42243597 ~ 42243837 (-) True G1811876
TU2072734 lncRNA downstream 200188 42186388 ~ 42186634 (-) True G1811790
TU2072691 lncRNA downstream 230935 42155653 ~ 42155887 (-) True G1811748
TU2072668 lncRNA downstream 244529 42142085 ~ 42142293 (-) True G1811725
TU2072624 lncRNA downstream 276977 42109279 ~ 42109845 (-) True G1811681
TU2073054 lncRNA upstream 15669 42404942 ~ 42406795 (-) True G1812093
TU2073077 lncRNA upstream 44062 42433335 ~ 42433544 (-) True G1812115
TU2073082 lncRNA upstream 48455 42437728 ~ 42437945 (-) True G1812120
TU2073103 lncRNA upstream 66292 42455565 ~ 42455917 (-) True G1812140
TU2073112 lncRNA upstream 71532 42460805 ~ 42461076 (-) True G1812149
XM_036959343.1 mRNA downstream 487082 41798454 ~ 41899740 (-) True LOC110502152
XM_021579998.2 mRNA downstream 619644 41764963 ~ 41767178 (-) True LOC110502131
XM_021579742.2 mRNA downstream 642998 41668896 ~ 41743824 (-) False LOC110501888
XM_021579743.2 mRNA downstream 642998 41702596 ~ 41743824 (-) True LOC110501888
XM_021579741.2 mRNA downstream 762026 41622821 ~ 41624796 (-) True LOC110501887
XM_021579753.2 mRNA upstream 202945 42592218 ~ 42603449 (-) True LOC110501896
LOC110502155 mRNA upstream 214725 42603998 ~ 42605768 (-) False LOC110502155
XM_021579754.2 mRNA upstream 351346 42740619 ~ 42748559 (-) False LOC110501897
XR_005038838.1 mRNA upstream 351985 42741258 ~ 42748561 (-) False LOC110501897
XR_005038839.1 mRNA upstream 351985 42741258 ~ 42748561 (-) False LOC110501897
TU2071948 other downstream 781591 41604974 ~ 41605231 (-) True G1811042
TU2071828 other downstream 921175 41447899 ~ 41465647 (-) True LOC110501886
TU2070925 other downstream 1573435 40736648 ~ 40813387 (-) True LOC110501878
TU2068897 other downstream 3442292 38944136 ~ 38944530 (-) False G1808299
TU2068898 other downstream 3442292 38944136 ~ 38944530 (-) True G1808299
TU2073346 other upstream 215430 42604703 ~ 42605020 (-) True LOC110502155
TU2073410 other upstream 287984 42677257 ~ 42677760 (-) True G1812404
TU2075666 other upstream 2121134 44510407 ~ 44553420 (-) True LOC110502171
TU2075825 other upstream 2284174 44673447 ~ 44673888 (-) True G1814480
TU2077141 other upstream 3449477 45838750 ~ 45840982 (-) True G1815615

Expression Profile