RNA id: TU2075837


Basic Information

Item Value
RNA id TU2075837
length 309
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1814492
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 44710013 ~ 44710321 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagtggtactcagtgatgtgttggatttgccccaaacataacgctttctattcaggacataaagttcataTCTTTGCCAATTTGTTTGCAGTTTTAGTGTCTTATTGCAAACAcgatgttttgtaatatttgtattcCGTACAGGGTTCCATCATTTCACTTCGTCatttaggttagcattgtggagttTTTTgttaaggggtggatcagcttaatgtTGCGGAAAGAATTTTGCtttcatcaatgtaattgtctgcatcatttccaatcccccatattttttgggggggttaatatgtacatatacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2075831 lncRNA downstream 10946 44698743 ~ 44699067 (-) True G1814486
TU2075828 lncRNA downstream 27305 44682381 ~ 44682708 (-) True G1814483
TU2075827 lncRNA downstream 33489 44676304 ~ 44676524 (-) True G1814482
TU2075768 lncRNA downstream 47441 44661111 ~ 44662572 (-) False LOC110501923
TU2075769 lncRNA downstream 47441 44661111 ~ 44662572 (-) True LOC110501923
TU2075842 lncRNA upstream 2006 44712327 ~ 44712621 (-) True G1814497
TU2075853 lncRNA upstream 22104 44732425 ~ 44732857 (-) True G1814508
TU2075854 lncRNA upstream 24290 44734611 ~ 44734813 (-) True G1814509
TU2075859 lncRNA upstream 29812 44740133 ~ 44740387 (-) True G1814514
TU2075866 lncRNA upstream 32451 44742772 ~ 44743952 (-) True G1814520
XM_036959404.1 mRNA downstream 45150 44659569 ~ 44664863 (-) False LOC110501923
XM_021579797.2 mRNA downstream 45150 44659908 ~ 44664863 (-) False LOC110501923
XM_036959403.1 mRNA downstream 45150 44659908 ~ 44664863 (-) False LOC110501923
XM_021579796.2 mRNA downstream 45150 44661070 ~ 44664863 (-) False LOC110501923
XR_002470302.2 mRNA downstream 73681 44634884 ~ 44636332 (-) True LOC110502136
XM_021579802.2 mRNA upstream 207158 44917479 ~ 44926432 (-) False LOC110501924
XM_021579800.2 mRNA upstream 207158 44917479 ~ 44928069 (-) False LOC110501924
XM_036959405.1 mRNA upstream 207158 44917479 ~ 44928070 (-) False LOC110501924
XM_021579799.2 mRNA upstream 207158 44917479 ~ 44935920 (-) False LOC110501924
XM_021579801.2 mRNA upstream 207158 44917479 ~ 44939556 (-) True LOC110501924
TU2075825 other downstream 36125 44673447 ~ 44673888 (-) True G1814480
TU2075666 other downstream 156593 44510407 ~ 44553420 (-) True LOC110502171
TU2073410 other downstream 2032253 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 2104993 42604703 ~ 42605020 (-) True LOC110502155
TU2073040 other downstream 2320740 42386822 ~ 42389273 (-) True G1812079
TU2077141 other upstream 1128429 45838750 ~ 45840982 (-) True G1815615
TU2078613 other upstream 2515230 47225551 ~ 47226646 (-) True G1816841
TU2078705 other upstream 2690801 47401122 ~ 47402047 (-) True G1816929
TU2079216 other upstream 2760973 47471294 ~ 47473384 (-) True G1817287
TU2079567 other upstream 3351728 48062049 ~ 48063644 (-) True LOC110501953

Expression Profile