RNA id: TU2077279


Basic Information

Item Value
RNA id TU2077279
length 2609
lncRNA type read_through
GC content 0.44
exon number 3
gene id G1815732
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 45962342 ~ 45993213 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgacgttagctaatatggtgataACGATGTCGACtatgtgtagcggttagcggttatgatatgaaggtttggctttttttgcctggtcagctagacagctgatgtgttgtgcactgaagtctacaagcaaagggaaaaggtgttaggagatgcgagaaggaattatatattatatatatattataatgtgCAAAAGAATcatactgtttgtatgtggctcctatgaaagtgaactgtgtttgcgtgtggtcAAGGGTGTATTAATTCCgcagattctgttgaaaaacatttcttaaatggaaagaaacggggataaacatacctgcatttgtccaatggaaactctcgtttgcaaaaAAAATCTTAAACGTCACTGACCTGTTTCATTCATCTGCTTGATCTTATATTTAGCATCACATTGAAGTGTTTTACCACGCTctttctatgtagaagaaccccttacagtatcatagacactatgtcctgggatttactatgatcttctatgtagaagaacccctaacagtattatagacactatgtcctgggatttactatggtcttctatgtagaagaaccccttaccttCTAACAATTCTTGGGTAGcttacatgtgtgtgtttgtgagtgtctcAGCTTTTCATATCAGGGTCATAATAGTCtgtagctcaaactgtttggacaTTACAGATGTTTTTTTGTGAGGAGAACTGTTTTCGGGACCCACCCGTGTCACACAAACTCCACTCTATCTCAGCCCCCATTAATCACACAGGTTAATGGTTGGTTCCTGCAGATGAAGAAGGAATAGACAAATCTGATGCAAAAAAAGGAGTATGTAgctcaaacacacaatgtttaaaaggggttgAAGTTAATAAATCACGCTGGTGTGATTGTGCGACTCAAAGCGAGGCCCTACCCGCGCCCCCACCCGGCTCCTGTGTGCTCTCTTGCCAGTTAGGGTGAGGCTACTTGAAGAGAGAGGGCGGCTCCTGTGTGCTCTCTCCACAGTTAGGGTGAGGCTACTTGAAGAGAGAGGGCGGCTCATTGTGTGCTCTCTCACCAGTTAGGGTGAGGCTACCCGAAGAGAGAGGGCGGCTCCTGTGTGCTCTCTCACCAGTTAGGAGAGGTCGGACAGATTCGGTGCCTGTGTCTGCCTCGGTCAAGCACCGTTTGCCTCTCTTCCCAGACATGTTGATGAACGTTCCTGTCCCACCCCAGTAAACCGTTTCCTACCTGGACTTTCGAGACTGGGCTAGCTAACCAAGCGCTGCATATAACTAGCTTTTCCTTCCTGCCCACAGTTGAGTTGCTGGGGTAGCTCTCTTGTTAAGAATACGTAGCTTAAATTCGCTTGGTTATTCTAAATAGTCAAAGATGCTAGCTAGCCTTCCTTGCCAGAGCCCCTTTTGCTTCCCGCACCTCAACTCTTTTCATTCCTGGGAATTATATTGAATTACTATTTGCTCCAGTCTGTTACAACAGCTGTCTGTCCCATTCCCAGGTATGTTACAAGGTATTTTGTCACCAGTAGCTATGACTGGTCTGTAGGGTAACCTCCATGATAAGGCTTTTCCCCTTGGTCTATTTTTTAATGCATGCCTTCCAGCACTGGGTGCCAGCCGGTTGCCAGAACGCATCTTACCGCCTAAACCGAGTGAGGCTCATCACTGATAGCCAGAGCCTGTGTACCCAGAGTGGGCTAGGCTTTAGGCAAACCTTGGCACATGAACACAGGTTTTTCAACTGAGATCCACAGTGTTCACGAGTGTAAAAACTGGTGTGTCTCCCACATATGAGTTAGATGAAAAGTGTCCCATCTCCACATTCAGACACACAGTTGTCAAGATTGGTGGAAGAATCTCTCCCAGTCCCAGGAtttcattggccttgtcaggCATGATTGTAGATCCTTCAGCCAAAGTCGCGAGAGtactccttcagggaacagtagttatagtcataaggCTACACTTTGCATCATACCgtggtatattgtctgatatacaGCTGGAATGCTGTTTAAGCCAATCAGCATCTAGGTCTCAAACTACCTGGTTTATCTGAATGAAAATCACCTTTCTTGAGTTGCAGGGAATTCTCCAGATACTGGTCTGGAGTGATTTCCCTGCCGTCGATCTCGAGCTGTAGAGTGAAATCTCTGACGGTCCACACAAAATTAGGAAAGAACTGCATAAACTGGgtgccctctccttcctcctcatcGACAGTGGAAGACTTTACCttgatcctctctgACGGTCCACACAAAATTAGGAAAGAACTGCGCAAACTGTgagccctctccttcctcctcatcGACAGTGGAAGACTTCACCTTGATCATCTCTGTCAGCTCGTTCACATATCTGTAGGACCGGTTGAGGATTGATACAGCATTTCCCAAAGCTCATGTCAATGTCATGCACTTTTTGTGTACAGGGAAATTACAGGGAAATTACAGGGAAATTACAGGGAaattacaaacaaacaaacaaaacaagtaATTTTCAGTTTAGATTTCAATTGACACAGTAACGTCATTTGTTTGAAAGTCACAGACTTTGCTTTTCGTCCACACCAGCTCTTCATGTTCACTGAAGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2077242 lncRNA downstream 19422 45942401 ~ 45942920 (-) True G1815703
TU2077244 lncRNA downstream 23541 45938515 ~ 45938801 (-) True G1815705
TU2077299 lncRNA downstream 28205 45933693 ~ 45934137 (-) True G1815751
TU2077298 lncRNA downstream 30234 45931878 ~ 45932108 (-) True G1815750
TU2077295 lncRNA downstream 33638 45928467 ~ 45928704 (-) True G1815747
TU2077278 lncRNA upstream 1608 45994821 ~ 45996041 (-) True G1815731
TU2077329 lncRNA upstream 16243 46009456 ~ 46009674 (-) True G1815781
TU2077467 lncRNA upstream 35360 46028573 ~ 46028927 (-) True G1815899
TU2077470 lncRNA upstream 40901 46034114 ~ 46064332 (-) True G1815902
TU2077481 lncRNA upstream 51122 46044335 ~ 46045898 (-) True G1815909
XM_036959423.1 mRNA downstream 235948 45702953 ~ 45726394 (-) True LOC110501932
XM_036959422.1 mRNA downstream 235949 45702953 ~ 45726393 (-) False LOC110501932
XR_002470275.2 mRNA downstream 374630 45582551 ~ 45587712 (-) False LOC110501943
XM_036959419.1 mRNA downstream 383436 45550854 ~ 45578906 (-) True LOC110501933
XM_036959418.1 mRNA downstream 383438 45550854 ~ 45578904 (-) False LOC110501933
XM_036959085.1 mRNA upstream 17902 46011115 ~ 46028506 (-) True LOC118943596
XM_036959427.1 mRNA upstream 126175 46119388 ~ 46156972 (-) True ints6
XM_036959443.1 mRNA upstream 876618 46869831 ~ 46974131 (-) False spopla
XM_036959444.1 mRNA upstream 876618 46869831 ~ 46974132 (-) False spopla
XM_021579869.2 mRNA upstream 1049012 47042225 ~ 47061327 (-) True LOC110501995
TU2077141 other downstream 121360 45838750 ~ 45840982 (-) True G1815615
TU2075825 other downstream 1288454 44673447 ~ 44673888 (-) True G1814480
TU2075666 other downstream 1408922 44510407 ~ 44553420 (-) True LOC110502171
TU2073410 other downstream 3284582 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 3357322 42604703 ~ 42605020 (-) True LOC110502155
TU2078613 other upstream 1232338 47225551 ~ 47226646 (-) True G1816841
TU2078705 other upstream 1407909 47401122 ~ 47402047 (-) True G1816929
TU2079216 other upstream 1478081 47471294 ~ 47473384 (-) True G1817287
TU2079567 other upstream 2068836 48062049 ~ 48063644 (-) True LOC110501953
TU2079734 other upstream 2275574 48268787 ~ 48291496 (-) True G1817668

Expression Profile