RNA id: TU2078613


Basic Information

Item Value
RNA id TU2078613
length 1062
RNA type TUCP
GC content 0.49
exon number 2
gene id G1816841
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 47225551 ~ 47226646 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTTTTGTTGTCATGGCCTGTTGCCATGttctgtggtctgttgtcattgtctgtggtctgtggtctgtcATGGCCCgtggtctgtggtctgttgtcatggtctgTGGCATGTGGTCTGTTTTCATGGCCtcttgtctgttgtcatggtctgTGATCTGTTGTCATGGCCTCTTGTCTGTTATCATGGTCTATGGTttgttgtcatggcctgtggcCTGTTGtcatggtctgtgttctgttgtcaTGGTATGTGGTCTGTTTTCATGGTCTGTGGTGTGTTGTCATGGCCTGTGTTCTGTTGTCATGGTATGTGGTTTGTTTTCATGGTCTGTGGTGTGTTCTCATGGCCTGTgttctgttgtcatggcctgtgtTCTGTTGTCATGGTATGGGGTTTGTTTTCATGGTCTGTGGTGTGTTGTCATGGCCTGTgttctgttgtcatggcctgtggtctgttgtcattgtctgtggtctgtggtctgttgtcattgcCTGTAGCCGGCGGTCTATTGTTGtggcctgtggtctgttgtcatggtctgtggtttgttgtcatggcctgtggcATGTGGTCTGTTTTCATGGCCtcttgtctgttgtcatggtctgtgatctgttgtcatggcctcttgtctgttgtcatggcctgtggtctgttgtcatggcctgtggtctgttgtcatggcctcttgtctgttgtcatggtctgtgatctgttgtcatggcctcttgtctgttgtcatggcctgtggtctgttgtcatggcctcTTGTTTGTGGTCTATtgtcatgtcctgtggtctgttgtcattgtctttggcatgttgtctgttgtcaaggCCTGTGCTCTGTTGTCATTGTCTTTGGTatgttgtctgttgtcatggcctgtggcCTGTGTTTTGTTGTCATGGCCTGTTGCCATGttctgtggtctgttgtcatggtatgtggtctgttgtcatggcctgtggcCTGTGTTCTGTTGTCATGATCTGTGGTttgttgtcatggcctgtggtctgttgtcatggcctgtggtctgttgtcattgcCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2078571 lncRNA downstream 49085 47176158 ~ 47176466 (-) True trpm2
TU2078497 lncRNA downstream 57052 47118451 ~ 47168499 (-) False G1816786
TU2078493 lncRNA downstream 57052 47124165 ~ 47168499 (-) False G1816786
TU2078485 lncRNA downstream 57052 47128271 ~ 47168499 (-) False G1816786
TU2078492 lncRNA downstream 57052 47154711 ~ 47168499 (-) False G1816786
TU2078602 lncRNA upstream 34605 47261251 ~ 47287422 (-) False G1816836
TU2078604 lncRNA upstream 34605 47261251 ~ 47266877 (-) False G1816836
TU2078594 lncRNA upstream 42970 47269616 ~ 47276714 (-) False G1816836
TU2078598 lncRNA upstream 42970 47269616 ~ 47270644 (-) False G1816836
TU2078597 lncRNA upstream 54121 47280767 ~ 47287422 (-) True G1816836
XM_036959445.1 mRNA downstream 121723 47086871 ~ 47103828 (-) True LOC110501994
XM_036959446.1 mRNA downstream 121746 47086871 ~ 47103805 (-) False LOC110501994
XM_021579869.2 mRNA downstream 164224 47042225 ~ 47061327 (-) True LOC110501995
XM_036959444.1 mRNA downstream 251419 46869831 ~ 46974132 (-) False spopla
XM_036959443.1 mRNA downstream 251420 46869831 ~ 46974131 (-) False spopla
XM_036959450.1 mRNA upstream 250982 47477628 ~ 47553609 (-) False cfap65
XM_036959451.1 mRNA upstream 250982 47477628 ~ 47553609 (-) False cfap65
XM_036959453.1 mRNA upstream 402234 47628880 ~ 47632649 (-) False LOC110501961
XM_021579839.2 mRNA upstream 402234 47628880 ~ 47635640 (-) True LOC110501961
XM_036959458.1 mRNA upstream 506573 47733219 ~ 47834252 (-) False ptprna
TU2077141 other downstream 1384569 45838750 ~ 45840982 (-) True G1815615
TU2075825 other downstream 2551663 44673447 ~ 44673888 (-) True G1814480
TU2075666 other downstream 2672131 44510407 ~ 44553420 (-) True LOC110502171
TU2073410 other downstream 4547791 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 4620531 42604703 ~ 42605020 (-) True LOC110502155
TU2078705 other upstream 174476 47401122 ~ 47402047 (-) True G1816929
TU2079216 other upstream 244648 47471294 ~ 47473384 (-) True G1817287
TU2079567 other upstream 835403 48062049 ~ 48063644 (-) True LOC110501953
TU2079734 other upstream 1042141 48268787 ~ 48291496 (-) True G1817668
TU2079931 other upstream 1232380 48459026 ~ 48460040 (-) True G1817836

Expression Profile