RNA id: TU2079554


Basic Information

Item Value
RNA id TU2079554
length 771
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G1817545
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 48136407 ~ 48137488 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGTATGGATACTGCAAGGTGTTGATAGCAGGACATacaatgggttgtatttacatatCAATACTTTGACGAATAATTAATTGATGTGTTGTTTCTGCTCTATAAAAAATGTAAGGCAGTTAATATATAACTAGGGATTTCAACTGTAATATGTTATTTTCCTACGGGTGTAGGTGTACGAAAAATCACAAATctctgtgtaaatgtgtgtgtaggtgtacgAAAAATCACAAATctctgtgtaaatgtgtgtgtaggtgtacgAAAAATCACAAATCTctgtgtaaatgtaaaaaaaaatgttgtataAAATGACTTCCAAGAATGATTTTACCGATATTGGGTGATCATCACATTTGTTGTTCATATTAGAGTCACACTAACCAATCAAACAGTAACACAGGAGTCACACTAACCAAATCAAACAGTAACACAGGAGTCACACTAACCAAATCAAACAGTAACACAGGACTCACACTAACCAATCAAACAGTAGCACTTATTCCCTACTTCACCTGTTTCTTCTCACTTTTTGGTTGTATTATGTATCTTCATTTTGTGTGTTGTTCCATGGCAGGCGACACCTCACTTCGCTGTGAGCAGTGAATGGACTGGGGGACCGGTCCCTATTCAGACTTCCAGCTCTTCCATCCTCGGTCATATGTCTCTTTGGgttgtgtgttgtttttttttaaatgatggtAATGTATTCTTTTCCCACAAGAAACAAACATGTTTCTGGTTGAGCTTATTCTTTCATAAATGAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2079610 lncRNA downstream 6158 48129442 ~ 48130249 (-) True G1817593
TU2079534 lncRNA downstream 55610 48040527 ~ 48080797 (-) False G1817543
TU2079615 lncRNA upstream 15849 48153058 ~ 48153868 (-) True G1817597
TU2079620 lncRNA upstream 32474 48169683 ~ 48169915 (-) True G1817601
TU2079628 lncRNA upstream 61936 48199145 ~ 48199900 (-) True G1817609
TU2079629 lncRNA upstream 64833 48202042 ~ 48202338 (-) True G1817610
TU2079659 lncRNA upstream 114802 48252011 ~ 48252265 (-) True G1817636
XM_021579829.2 mRNA downstream 71954 48057851 ~ 48064453 (-) False LOC110501953
XM_036959461.1 mRNA downstream 164276 47897057 ~ 47972131 (-) True tmem198a
XM_036959457.1 mRNA downstream 302153 47733219 ~ 47834254 (-) True ptprna
XM_036959458.1 mRNA downstream 302155 47733219 ~ 47834252 (-) False ptprna
XM_021579839.2 mRNA downstream 500767 47628880 ~ 47635640 (-) True LOC110501961
XM_036959466.1 mRNA upstream 2552 48139761 ~ 48220042 (-) False LOC110501956
XM_036959467.1 mRNA upstream 2552 48139761 ~ 48220042 (-) False LOC110501956
XM_036959468.1 mRNA upstream 2552 48139761 ~ 48220042 (-) False LOC110501956
XM_036959469.1 mRNA upstream 2552 48139761 ~ 48220042 (-) True LOC110501956
XM_021580043.2 mRNA upstream 368236 48505445 ~ 48645921 (-) False LOC110502188
TU2079567 other downstream 72763 48062049 ~ 48063644 (-) True LOC110501953
TU2079216 other downstream 663023 47471294 ~ 47473384 (-) True G1817287
TU2078705 other downstream 734360 47401122 ~ 47402047 (-) True G1816929
TU2078613 other downstream 909761 47225551 ~ 47226646 (-) True G1816841
TU2077141 other downstream 2295425 45838750 ~ 45840982 (-) True G1815615
TU2079734 other upstream 131578 48268787 ~ 48291496 (-) True G1817668
TU2079931 other upstream 321817 48459026 ~ 48460040 (-) True G1817836
TU2080079 other upstream 332389 48469598 ~ 48470035 (-) True G1817968
TU2080196 other upstream 490155 48627364 ~ 48627846 (-) True G1818059
TU2080631 other upstream 988305 49125514 ~ 49126117 (-) True G1818393

Expression Profile