RNA id: XR_005039135.1


Basic Information

Item Value
RNA id XR_005039135.1
length 3421
RNA type mRNA
GC content 0.52
exon number 16
gene id LOC110503040
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 57570746 ~ 57588495 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagacAGGGAGGACGTCAGGGAGGGACCATCAACAGCCTTTGTCTCTCACAGTCTGTTTCTTAGCGAGAAGAGAGACGGCTGGTCTTTAATGCTGAGGATCCCGGAGAAGAAAATACCGAATGTCGTCCCGACAGTGGGGCCCCATTTACCTGCGTCTGCTGTCTGGAGGGGTGCTCCAGATGTACTATGAGAAAGGACTGGAGAAGCCCTTCAAAGAGTTCCAGCTGCAGCCTCACTGCAGGTTTTCAGATCTCAAGCTGGAGAGCAACGGAGAGCCTCGCAAGATCCAGACAGTGAAGGTGGAGGACGTGTCTTACACAGAGAAGAAGCGCTACCACCACAAGctggAGGTGTCCCACAAGGCTGAGGTGGAGCAGCTGCTGAAATTTGGAACCACGGAATACGGCGACATGGAGGATCTGTTAGAGACCATGGAGGAGGAGATTCTTAGGCTGACTCCGCCCCTGTCGCAAAAACGGCACTACGAGGAACAGGAGATGACACTGCAGATCCCAGACCACCTCTGGGTGCAGCTGGACAAGgaCGGTGTGATAATGGATCGGGCAGCCATGACGAGGATCCACTGCCTGGCTTTCCTCAACGGACCAGGGGAGTGTTTCCTGGCTCTCAACGACCTAGGGCTCCTCCGCTTCGACGCCAGCTTCGGCTCTGAGGAGGGCTGGATGGAGATCAGTGACTGCCACTTCCACAAGTGCATCAATGACTTGGAGTTCCACAGGTCCCGGCTGCTCAAGTTCTCCCCTCCGGACGCCTGTAGAGTAGAACTGATGCGCTACAAGACGTTAGCCCTGGGATGTACTAACCTACCGTTCTCCGTCAAAGCCGTGGTGACTGTCCAAGGGGCCTATGTGGAACTCCAAGCCTTTCTCAACATATCAGCCGCCTTCCCGTCATTTACTGGAGTGTCGGAGACTGAGCCGCTCTACGAGAACGTTCTGATCCGTGTGCCGGTACCGGCGGACTGGGTGAAGGTGTCACGCACTGTGACGTTGCTAAGACGGAAGTCCCTGCCGGCCAGGATCAACCGGAACGCGTGTCTGGggacagtcagtgttgttgagtcaCAGCCGGTCATGCAAGTTACCGTGGGGACAGTCAAGTATGAGAATGTGTACTTGGCCATGGTGTGGAGGATCGACAGACTGCATGCTAAGAACATGGGTAAGGATTAAGAGGAATAAAAATCCCATACCTTCTCCTGTAAATTAGAGCTTGGTTCAGATCAGGAGATCCCCACTGACTGGTATCCGTTTGTCACGATGGAGTGTGAGATGGTAGGGGCTGTGGTCTCACAGACCAGAGTGACGTCACTGGGCACAGACAGTGACGTTCAGCCTCAGAAACATGTCACCGGTAGGACCCACTATCATTGTCAGCCGAAGCTCTACCTGTCCATCATAGATGATGTGATTGAGAGCATGCGGGAGGTGTTTCTGGATGAAGGACTGGAGGACCGTGTCCTTGATGACCTGAGACAGCTCTGGGAGTCAAAGATTATGCAGTCCAAAGCAGTGGATGGCTTGGCCCTCATGAAGAACACCATCAACTCATCCAACTTTGTGCTGCAGCTCCCTCCAAACTATGGACAGACTTTTACAAAACCTGCAGCCTCTATGGTGATCCCTGCAGGTCAACACGTCCAGAGTTTCACTGCTAAGAACAACGGTGGGACTCTGgccaccttctctcttcctcccgggATGACCTACCCAGTCCAGATCCCTGCAGGGGTCACACTGCAGACGGCCTCTGGCCAGCTTTATAAGGTCAATGTCCCAGTGATGGTGACCCAGACTCCAGCCGGTCATCACCATCTCTCTCAGGCCCAACCCAGGCAAGGGGTACCTGTAGTGGAGTGGAGAGATCCCAGCTCAGCTTCCCAGCAGTCAGCCACAGTGGTCCCTTCTACTGTCCTAAAGACCATGGCCCTTCCGAAGACTGAACCTTTTCCCCCACAGCCTGTGGCTCCTCCCAGAGCGGATCCTCAGACCACAGAGCAGAGGAGCCTGATTCCTCCGGTCCAGCCACCTAATGAGAAGCCTTTGCTACCCCAACCTGTGGTCCAGCCCCCAGTTCAGGAGAATAATCTTGTTCAGCAGCCACAGGTTCCTTCAGCTCAGGCAACCTTTTCTAGTCAGACTCCAGTGTCCTTCCAGCCCCCAGCCCAACCTCCATCTCACCCCCCTGAGAGCCCCTTCGACAGTGGTGATTTCACTCTGGATGGGATTGATTTTGACAGTCCACAGCCACTAGACATGAGCCTGTCCTCCGGCTCCGCCCACATGCCAAGCCTTCAGGTCAAGATGGAGACGACCCTGTCTGAAGGGTCAGGGTTTatgggtcaggggtcagagtttGAGGCCAGCGAGATGGTGAAACAGGAGGATCATGGAGGAGCGGTGGCTGATATGACAACCCACCTGGAGGGTCTACCTGTGGATGCTACCAAGCTGGAGATGGCCCTGTTGAAAGACTACAACTACAATGATGCTCTGGCAGACATCATCCAGCTGGACGGGCCTGCAGACAGCAGctctgaggaggtggaggagttgGAAGGAGGTGCGATGGGAGAAAATGAGTTCCTAGGAATGATGACTGTGGAGGCTCTCCAGGCCCTACAGGAGGTAGATGGCAGCAGTGATGATGGCATCTCCAGCTCCAGTGGTGACAGTGTGGGGATGGATGAAATCACAGTGGAAGAGGATCCTTTAAACTCTGGGGATGACGTGAGTGAGCAGGACATTCCTGATCTCTTTGACACTGACAATGTGATAGTGTGTCAGTATGATAAGATTCACCGCAGTAAGAACCGGTGGAAGTTCTATCTGAAGGATGGGGTGATGTGTTATGGAGGAAAGGACTATGTCTTCTCTAAGGCTGTCGGCGAGGCAGAGTGGTGACTGGGTTTTTGTTATGTTCCAATGTCCATACGAGAATAGTTCAGAGGCGAAGAGGGGTTTTTGTACAATACCTCTTGGGATGCAATGGTAGTACATTCTAAGTAGAATGCTAGTGTGAATATTGGAACAGAACCTTGGTCTGTATTTCACCCATGTGGATACAGCCTTGACTTAGTCTTAAATGTATCCAACGAGGCGCATAAAACATGAATATATTGAGAGAATAATATCATTTGAAGTTAATGGGGAAAACCACAGTTGTTCAGTGAGCTAGAACATACAATCTATGCAGGCTTCTAATCTGAAGAAAAATGTCTGGACGAGTAAAGAGTCCGTCCCACACGgcaacctgttccctatatagtgcactacttttcaccagccACCACAGTGCACAAAGGGCTTTTTGAGTTGTTAATTTTGTTTATGTaactatttatttatatttttgtatttgttgtgtAATGCCATTAAAGGAGCACTGAGCACTAAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2155092 lncRNA upstream 8688 57561736 ~ 57562058 (+) True G1883881
TU2155090 lncRNA upstream 11478 57559060 ~ 57559268 (+) True G1883879
TU2155074 lncRNA upstream 74599 57495920 ~ 57496147 (+) True G1883863
TU2155061 lncRNA upstream 96514 57473996 ~ 57474232 (+) True G1883850
TU2155060 lncRNA upstream 97351 57473168 ~ 57473395 (+) True G1883849
TU2155329 lncRNA downstream 1550 57590045 ~ 57590267 (+) True G1884093
TU2155331 lncRNA downstream 4665 57593160 ~ 57593406 (+) True G1884095
TU2155335 lncRNA downstream 8051 57596546 ~ 57596777 (+) True G1884099
TU2155419 lncRNA downstream 83382 57671877 ~ 57676345 (+) True G1884173
TU2155452 lncRNA downstream 116939 57705434 ~ 57724679 (+) False G1884203
XR_002470415.2 mRNA upstream 19950 57545275 ~ 57550796 (+) True LOC110503013
XM_036960877.1 mRNA upstream 30378 57499694 ~ 57540368 (+) True LOC110503012
XR_005039277.1 mRNA upstream 171309 57379129 ~ 57399437 (+) True LOC118943926
XM_021581367.2 mRNA upstream 727271 56829056 ~ 56843475 (+) True LOC110503004
XM_021581365.2 mRNA upstream 742014 56812405 ~ 56828732 (+) True LOC110503003
XM_036959915.1 mRNA downstream 1276120 58864615 ~ 58865931 (+) True LOC118943835
XM_036960895.1 mRNA downstream 1747968 59336463 ~ 59345077 (+) False LOC110503019
XM_021581399.2 mRNA downstream 1748245 59336740 ~ 59345077 (+) True LOC110503019
XM_036959916.1 mRNA downstream 1992604 59581099 ~ 59581875 (+) True LOC118943836
XM_036960899.1 mRNA downstream 2114899 59703394 ~ 59816421 (+) False LOC110503016
TU2154622 other upstream 557528 57012037 ~ 57013218 (+) True G1883457
TU2153723 other upstream 843552 56699238 ~ 56727194 (+) True LOC110503001
TU2153730 other upstream 882826 56673248 ~ 56687920 (+) False LOC110503001
TU2153880 other upstream 1027490 56533617 ~ 56543256 (+) True G1882831
TU2153877 other upstream 1032263 56529795 ~ 56538483 (+) True G1882830
TU2156976 other downstream 1273719 58862214 ~ 58864502 (+) True G1885587
TU2158064 other downstream 2135769 59724264 ~ 59736661 (+) True G1886557
TU2158065 other downstream 2139251 59727746 ~ 59736471 (+) True G1886558
TU2158068 other downstream 2161223 59749718 ~ 59786095 (+) False G1886560
TU2158069 other downstream 2174818 59763313 ~ 59786095 (+) False G1886560

Expression Profile