RNA id: XM_036960899.1


Basic Information

Item Value
RNA id XM_036960899.1
length 5482
RNA type mRNA
GC content 0.48
exon number 23
gene id LOC110503016
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 59703394 ~ 59816421 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAAGTGGGCTTGATAGAGAGGTTGGATTGGGAAacgagagagcgcgagggagggTCTCCGGGACCGGAGATATGATACTCAGAAGTCTCAACTTGCTGCCGATTTTATTACTTTGCTCCTCAGCGCTACCTCAAGATGGCGAGGTCACATCGGATGACGACACAACGTTTGACCTGTTTGATATTAGCGGTATCACACGCAAGACTCTGGGCGCCAAGCAATTCCGCGGCCAAGACACGGACAACCCTGCTTACCGCTTCATCCGCTTCGACCATTTGCCCTCAGTGAGCGCGCCCGTGCTCAAACAGATGCTTCAGCAAATCCAGAACAATGAGGGCTTCGTGTTCGTGGCCAGCATGCGCCAGGACCGCGGATCGCGGGGAACCCTCATCGCCATGGAAGGCGCCAACGGCCAGCGGCAGTTTGAAATAGTCTCCAACGGCCGCGCCAACACGCTGGACCTTGTCTACTGGGTGGACGGCTCCCAAAATGTTGTCTCCTTCGAGGATGTTGACCTGTCCGACTCGCAGTGGAAGAATATCACACTTCATGTTCATGGCGAAAACGCAAATCTGTTTGTGGGCTGCAGTCTCATCGACAGCTTCATCTTGGATGAGCCGTTCTACGAGTACCTGCAGGCGGAGGGGAGCCGAATGTTCGTCGCTAAGGGATCCATCCGTGAAAACCACTTCAGGGGGTTACTGCAGAACGTTCGCTTCATGTTCGACACATCCGTGGATGACGTTCTTAGGAACAAGGGCTGTGAAGTCACTAAGCCAGACGAGGCCAACACGGTGGTGAGTGAGAGCACAGACATGGTGGATGTGAGTTCCTCCACTGCCATCACCACTAACTTCATTGGCCAGAAAACAGAGAATCTAGGAGCAGATATGTGTGAACGATCCTGTGAGGAACTCAGCATCATGTTTCAGGAGCTCAAAGGACTGCGGGTTGTAGTGGGGAACCTCATTGACGGCCTACAGAAAGTGaccGAGGAGAACACAGTGATGAAGGACACTCTGGGAAAGATAAAGAACTCCAAGGAGAAACACATGTGCTGGCAGGATGGACGGATGTTTGAAGATAAGGAGGACTGGGTGGTGGACAGCTGCACCACGTGTACCTGCCAGGACTCAAAGATTGTGTGTCACCAAATCACCTGTCCACCTGTGGCCTGTGTTGGCCCCTCCTTCATCGACGGAGAGTGTTGCCCTGTGTGTCTGCCCAAGGACAGTGAGGACGGCTGGTCCCCCTGGTCAGAGTGGACAGAGTGTACtgtcacctgtgggacaggtactcAACAGAGAGGACGCTCATGTGATGCCACCAGTAACCCCTGCTCTGGACCATCCATCCAGACCAGGAAATGCAGCCTGGGAAAATGTGACAGCCGAGTTCGTCAGGATGGTAGGTGGAGCCTGTGGTCTCCATGGTCATCATGTTCCGTGACGTGTGGCGAGGGTCAGATCACCAGGATACGCCACTGCAACGCCCCCACACCACAACTGGGGGGCAAAGACTGTGAGGGccaggggagagagacacagcgctGTGAGGCCAAGCCCTGTCCCATTGACGGTGGTTGGGGACCGTGGTCGCCATGGGCGATCTGCTCGGCAACCTGTGGGGGTGGAGTTAAGGGTCGGACCCGTGTCTGTAACAGCCCCGAACCCCAGTACAAAGGCAAGAAGTGCCCCGGGGAGACCAATGACAGTAACGCCTGCAACAAACAGGACTGCCCTatcgACGGCTGTCTGTCTAACCCATGCTTTGGGGGAGTGCACTGTAACAGCGGCTCTGACGGATCCTGGGAATGTGGACCCTGCCCCCTTGGTTTCCGTGGCAACGGCACCCACTGTGAAGATGTCAACGAGTGTGACATTGTGTCAGATGTCTGCTTTAAAGCTGGTGGAGCATTGCGTTGCGTCAACACAGACCCAGGGTTCCACTGTCTGGCCTGCCCACCCCGCTACAAGGGAACACAGCCCTTCGGTGTGGGGGTGGAGGCTGCCAGCAAGAACAAACAGgtTTGCGAGCCAGAGAACCCCTGCAAAGACAAGACCCACAACTGTCACCGTTCAGCTGAGTGTATCTACCTTAGCCACTTCAGTGACCCCATGTATAAGTGTGATTGTAGGATAGGCTATGCCGGGGATGGCTTCATCTGTGGAGAGGACTCTGACCTAGACGGATGGCCCAATCAGAACCTGGTGTGTGGCGCCAACGCCACCTATCACTGCAGGAAGGATAACTGCCCCAACCTGCCTAACTCTGGACAAGAGGACTTTGACAAAGACGGCCAGGGAGATGCTTGCGACAAGGATGATGACAATGATGCAATCGTGGATGAGAGAgacaACTGTCCTCTCCTGTATAACCCCAGACAGTTTGACTTTGATAAAGATGATGTGGGTGACCGTTGTGATAACTGCCCCTATGAACACAACCCTGCCCAGATTGACACTGACCACAACGGCGAAGGAGATGCCTGTGCTGTCGACATTGATGGAGATGAAATCCCAAATGAGCAAGACAACTGTCCGTACGTGTACAACAATgaccaaaaggacactgacatggATAGAGTGGGTGACCAGTGTGACAACTgtcctctattacacaaccctGACCAGGCTGACACAGACAATGACCTTGTAGGAGACCAGTGTGACAACAACCAGGACATTGATGAAGACGGTCACCAGAACAACCTGGACAACTGTCCTTATGTGGCCAACTCAAACCAGGCAGACCACGATAAGGACGGTAAAGGGGACGCCTGTGACTTCGATGATGACAATGACGGTATCCCTGACGATAGAGACAACTGTAGATTGACGCCCAACAAAGATCAACTGGACTCTGATGGCGACGGTAGAGGAGACGCCTGCAAAGACGACTTTGACAACGACAACATCCCGGACATCCTTGACGTGTGTCCTGAGAACAACGCCGTCACCGTCACAAACTTCCGGAAGTTTCAGATGGTGCACCTGGACCCCAAGGGAACCACGCAGATCGACCCCAACTGGGTGGTTAGGCATCAGGGCAAGGAGCTGGTGCAGACCGTCAACTCTGACCCAGGCATCGCTGTTGGCTTTGATGAGTTCATCGCGGTGGACTTCAGTGGTACGTTCTATGTGAATACGGACCGGGATGACGACTACGCTGGTTTCGTGTTCGGCTACCAGTCGAGCGGCCGCTTCTACGTGGTGATGTGGAAGCAGGTCACTCAGACCTACTGGGAAGACAAACCCTCCAAGGCCTTCGGTATCTCTGGTGTCTCCCTGAAGGTGGTCAATTCAACCACAGGCACAGGGGAGAACCTGAGAAACGCCCTGTGGCACACAGGAAACACTAAAGATCAGGTGCGCACTCTTTGGCACGATCCCAAAAACATTGGCTGGAAGGATTACACAGCCTACAGGTGGCACCTCATCCACAGACCCAAGACTGGTTTCATCAGGGTTGTGGTGTATGAAGGGAAACAGATCTTGGCAGACTCAGGACCAGTGTACGACAAGACGTTTGCCGGAGGACGGTTAGGCCTGTTTGTGTTCTCCCAGGAACTGGTCTTCTTCTCCGATCTCAAATACGAGTGCAGAGATGAGCTGGAGTTTCCAACTGTGTTGTCCATCAGATAACTGAACAGCGTTGGATGTGAAAACTTCAAATGGCTAAAGACACTAAACCTCATAACCTGATCACCAGCCTATCGCTGAGTCGCTTGTCATTTCAACCAAAGAAATGTAGCTTCAACTTCGCCCCTCCAAAGTCTTTTTGCCTCTAACTTTCCATTGAAGGGGCAGCCATGGCCCTTTGCAGTTTTTCTGAGTGCCTTGTGTGAAAAGACATTTCCTGGAGAAGTGAAAACAGATGTGGACAAATGAAAAAGGACATGGCGATGGGAAAAATCTAAGTAACTGATGTTGACAACATATTATGGGGATTCTTTCAACAACCACTTTTGTGCTTTTCTAACTTTCTACAGCTTTACATTAACAAAAGTAAATATAAAATGATTGTTACTCGATAAATATTGATATTCTTGCTGGAATAGAGAGCAACTTGGTACAGTAAAGGTGTCTAGGTCGCCCAGCAACTAAAGGTCTCTGTATTGAGCTCAGCAGTTTCAGCCATACAGTGAAAAATACGATCAAATGTAATATTAACTGCCAAACTCTTTTTTTATACCAAAGCACACTGACGTATGTTGCTGACTTAATGAAACAAAGTTATATTTTGTATTGTTTCTTATGCCATCCTGAACTGGTCTTCAGTTACCCATTTAAAATGTTTGTCAAACTCTAAGAAGGTTGACCTTGAGACCGTTTTATAGCATTTTAAAGTACTTTGGGATGTTTATACTAAGTTTGTACTATAATTTCTTCTGTAAATTATTATTGTGAGTTTatgtcttgtttgttttgtttgttagagatggtaaatcatttatttatttgtttacacTGACGAAATTTCACAATTGAAGTACAACAGAAAAATCGTTGGATATCAACATCAAAATGTCTCAAACATCAAGATAAAATAGACTATCACAAACTTTGTGCACTATGCAGTGTTATGTCATGTATTACTTGATTCATATGTTCACTAATTCCCCAAGAGAGGCCCTATCGTCACTCAAAACAATGCAGTGGTTTCAAGTGGAGCAGTTGTAGTAGTTTGGGTTTGTTGTAGCGTTCTATTCAAATACCCCTCCAGCATCCCACTTCGATGGAATCAAGCAATACATTGTGCATGCATTCTAGTAGTATGCTAGTATGGACATTGGAACATAGACTTAAGTGTTGATGTAAGAGTGCTACATTGATGTAAGGGCAAATGTCATGTTTGGggttagttgtagtagtagtatgtgtgagagaacaacaaggattattattattattatcacagCATCCTTGACCACGACAGCTGACGGTCTGAGGTTTGAGTGTGTTTGCCTGGTGTGACAGGGGGACATTTCAGATGGGACACAATGAAAACACTTGACTTTATGTCAATGTAAATGTGTCGTTCACGTGTTAACGTAGAAACAGGTGGTCATGAGAAGAGAACTTTCTGTTTTGAATGAGTGAAACATTTAACCAGATGAATCTATTCAAACATTTAACCATTCTAGAATCTATTCAAAAATCAAGTAAAAATGTTTCTTGTAACTTTTGGTTGAATTTTATGTATCAAGGATATTTGCAATGTATAGCTTTTAAGTTGTCATCAGTCTGCATAGCATGAATTGTTGTCAAATGTAGTTTTCTTTGTTAATAACTAGCTTTGTTATATTTTGTGAGGGATATTGCAAtgcacaaatgtaaaaaaaaaaaagtttaaaaaaaacggTATTTGTTTGTTGTTAAATTTACCATTATTAGTTGTGATAGTTGTGGAGGAGTCGTCATGTATGTGTTCCACTTAAAAGAGATCATCTTATTTCCTAAATAAATTGTTTGTACGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2158053 lncRNA upstream 3333 59699848 ~ 59700061 (+) True G1886548
TU2158044 lncRNA upstream 10639 59692493 ~ 59692755 (+) True G1886539
TU2158043 lncRNA upstream 10916 59692255 ~ 59692478 (+) True G1886538
TU2157985 lncRNA upstream 75426 59627751 ~ 59627968 (+) True G1886482
TU2157937 lncRNA upstream 113095 59590029 ~ 59590299 (+) True G1886436
TU2158134 lncRNA downstream 1003 59817424 ~ 59817690 (+) True G1886615
TU2158139 lncRNA downstream 6866 59823287 ~ 59823625 (+) True G1886620
TU2158164 lncRNA downstream 45015 59861436 ~ 59862462 (+) True LOC110503015
TU2158168 lncRNA downstream 159727 59976148 ~ 59976670 (+) True G1886645
TU2158216 lncRNA downstream 169914 59986335 ~ 59987088 (+) True G1886685
XM_036959916.1 mRNA upstream 121519 59581099 ~ 59581875 (+) True LOC118943836
XM_036960895.1 mRNA upstream 358317 59336463 ~ 59345077 (+) False LOC110503019
XM_021581399.2 mRNA upstream 358317 59336740 ~ 59345077 (+) True LOC110503019
XM_036959915.1 mRNA upstream 837463 58864615 ~ 58865931 (+) True LOC118943835
XR_005039135.1 mRNA upstream 2114899 57570746 ~ 57588495 (+) True LOC110503040
XM_021581395.2 mRNA downstream 30690 59847111 ~ 59862494 (+) False LOC110503015
XM_021581386.2 mRNA downstream 30699 59847120 ~ 59862494 (+) False LOC110503015
XM_036960907.1 mRNA downstream 30706 59847127 ~ 59862494 (+) False LOC110503015
XM_021581394.2 mRNA downstream 30709 59847130 ~ 59866775 (+) False LOC110503015
XM_036960909.1 mRNA downstream 145794 59962215 ~ 59972534 (+) True LOC110503042
TU2156976 other upstream 838892 58862214 ~ 58864502 (+) True G1885587
TU2154622 other upstream 2690176 57012037 ~ 57013218 (+) True G1883457
TU2153723 other upstream 2976200 56699238 ~ 56727194 (+) True LOC110503001
TU2153730 other upstream 3015474 56673248 ~ 56687920 (+) False LOC110503001
TU2153880 other upstream 3160138 56533617 ~ 56543256 (+) True G1882831
TU2158232 other downstream 353927 60170348 ~ 60170780 (+) False slc35f3b
TU2159617 other downstream 1460354 61276775 ~ 61277763 (+) True G1887835
TU2160160 other downstream 2110325 61926746 ~ 61927857 (+) True G1888298
TU2160531 other downstream 2748104 62564525 ~ 62565083 (+) True G1888544

Expression Profile