RNA id: XM_021581386.2


Basic Information

Item Value
RNA id XM_021581386.2
length 2027
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC110503015
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 59847111 ~ 59866775 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCTGTAATAAACACGTAGGGTAGGCGAACCCAATGCAACCCCCCCGAATGACGAGAATCATTTTGAATTTTCTCGATTACTCGcgtcctctcctccgtcctctcctcgcctccttttgAAACGGGAGAGGGTGAACTTTGACCAATTGAGAAAATGCCAAATAAAAGTGGCGTGTTGTCAGGTGGGTGTTCTGGCGGCGGGTGTTCCTATAATTAGATTGAAGGAGTTAGTTTGGGGACATAAGGACATCTCTCAATGCTCATTCTGATCAAGccttacagacagacagtttggAGACAACATTTCCGTCAGTGTCAGGACTGCTTTATCGCTGACAGAAAGGAACCAAAGCCAGGGACAACGGACAAGATGGGTCTGGTACAGTGGTTGAAGGGCCAATTTTTGTGTCACCTGATCATCTGCTATGGGTTCTTGGTCAGCGGTCTCCTGGTCAACCTATTACAGATCTGCACTCTGCCCCTCTGGCCAATCAACAAGCAGCTGGCCCGGCGGATCAACTGTAAACTGGGATATTCCCTCACCAGCCAGTCTGTGGCTCTCCTAGAGTGGTGGTCTGGCACTGAAGTAACTTTCTACACAGACCCAGCGGACTACCAAACCTACGGCAAAGAGAACGCCATCGTCGTCCTTAACCACAACTTTGAAATAGACTTTCTGTGTGGCTGGACCTTCTGTGACAGATTCGGGGTCCTTGGGGCCTCCAAATGTTTAGCCAAGAAAGAGTTGTCGTACCTGCCTGTGATTGGCTGGATGTGGTACTTCCTGGAAATGGTGTTTATTAAGAGGAAGTGGGAGGAGGATAAGAGGAGCTTTGTCCAGAGTCTTCAGAACCTACGGGATTACCCCGAGAACTTCTGGTTCCTGCTCCACTGTGAGGGAACACGCTTCACAGAGGAGAAGCATCAGATCAGTATGGAGGTGGCAGAGAAGAAAGGCCTGCCTAAACTCAAACACCACCTCCTGCCCAGGACCAAGGGCTTCTGGGTAGCCGTCCAGAACCTCCGAGGGACAGTTGCTGCGGTCTACTGTTGTACACTAAATTTCAGAAACAACGAAACACCAACCTTGCTGGGAGTTATCAACGGGAAAAAATATCATCCAGATTTATACATAAGGAGAATCCCTCTGGAGTCCGTACCAGAAGATGAGGCTGAATGTTCTTCCTGGCTTCACAAACTCTACCAGGAGAAGGACCAGTTCCAGGAGGACTACAGCCACACCGGGTGTTTCCCTGGCCCTGTAGTCACCCCTCCGCGTGGACCCTGGTCCCTGATCAACTGGATAGGCTGGACCTGCCTTCTCCTAtaccccctctacctcctcctggtCCAGCTGGTCCTCTCTGGGTCTATTCTCACCATACTGGCCACTGTGGCCTTCTGCTCTGCAGGACCCAGAAAATGGAGGCAGTGGGAGAACttattcaaCTACAGAGCGCTATGGATCCGTCTGCAGATGAATGTCCCAAGAGTACCGGTACACCCTTGTATGCCATGGATTAtgtatacctacagtatgttagcaAAAATAGTTTAAAAGTGACACATGTATAAACATTTTACAACTGGAGCAGGGCAACCCTGCTGGGGGTGCAGGCTTCTGTTCcagtactaacacacctgattcaatgtGTAAGTAGTTAATAATCAAGTGTGCTCCCCACTGTAGATCAGGGAGCAGTGgaggggagaacagctcataatTATGCCTGGAACTGAGCgactggaatggcatcaaacacatggaaaccatgtacttgataccattccactccagcTATTGCCATGAGCCTGTTCTCCCCAtttaaagtgccaccaacctccaTTGCAGTGGAGATGGACATTTCTTTTTCTTCGCCTGGCATTGTTTTAGTAACAACCGTTAACTTACATGTAAAGTTTAGACATTTTAGGAAGTAATCTTCAAAGAATCAACACTTTCATATAATTTCAAACGGTGCAAGTAAGCTGTGTTTAAACGTGTTTTAATTAAACTTTTTCAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2158139 lncRNA upstream 23495 59823287 ~ 59823625 (+) True G1886620
TU2158134 lncRNA upstream 29430 59817424 ~ 59817690 (+) True G1886615
TU2158082 lncRNA upstream 48122 59798622 ~ 59798998 (+) True G1886570
TU2158074 lncRNA upstream 58490 59768276 ~ 59788630 (+) True G1886562
TU2158063 lncRNA upstream 124316 59716295 ~ 59722804 (+) True G1886556
TU2158168 lncRNA downstream 113654 59976148 ~ 59976670 (+) True G1886645
TU2158216 lncRNA downstream 123841 59986335 ~ 59987088 (+) True G1886685
TU2158220 lncRNA downstream 127833 59990327 ~ 59990543 (+) True G1886689
TU2158264 lncRNA downstream 222197 60084691 ~ 60084897 (+) True G1886728
TU2158267 lncRNA downstream 227292 60089786 ~ 60090030 (+) True G1886731
XM_036960899.1 mRNA upstream 30699 59703394 ~ 59816421 (+) False LOC110503016
XM_036960898.1 mRNA upstream 30699 59703501 ~ 59816421 (+) False LOC110503016
XM_036960900.1 mRNA upstream 30699 59703502 ~ 59816421 (+) True LOC110503016
XM_036959916.1 mRNA upstream 265245 59581099 ~ 59581875 (+) True LOC118943836
XM_021581399.2 mRNA upstream 502043 59336740 ~ 59345077 (+) True LOC110503019
XM_036960909.1 mRNA downstream 99721 59962215 ~ 59972534 (+) True LOC110503042
XM_036960910.1 mRNA downstream 150211 60012705 ~ 60174128 (+) False slc35f3b
XM_036960911.1 mRNA downstream 150211 60012705 ~ 60174129 (+) False slc35f3b
XM_036960912.1 mRNA downstream 222893 60085387 ~ 60174128 (+) False slc35f3b
XM_036959918.1 mRNA downstream 462795 60325289 ~ 60371061 (+) True col9a1b
TU2158073 other upstream 59131 59783986 ~ 59787989 (+) True G1886561
TU2158068 other upstream 61025 59749718 ~ 59786095 (+) False G1886560
TU2158069 other upstream 61025 59763313 ~ 59786095 (+) False G1886560
TU2158067 other upstream 61025 59774662 ~ 59786095 (+) True G1886560
TU2158065 other upstream 110649 59727746 ~ 59736471 (+) True G1886558
TU2158232 other downstream 307854 60170348 ~ 60170780 (+) False slc35f3b
TU2159617 other downstream 1414281 61276775 ~ 61277763 (+) True G1887835
TU2160160 other downstream 2064252 61926746 ~ 61927857 (+) True G1888298
TU2160531 other downstream 2702031 62564525 ~ 62565083 (+) True G1888544

Expression Profile