RNA id: XR_005039418.1


Basic Information

Item Value
RNA id XR_005039418.1
length 1526
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC118944104
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 38711025 ~ 38736584 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATACCCGACAGGCTTTAAGACACAGAGATGGTGCTCTGATAAGGTAGCACAGCTGAGAAACggcaaaaggagagagagagaagatgtaggaggcagagagagagagagacagagacagagagctgtttcttctgctgtactgtagtttGAAAGTCACAGAAATAGCTGAGTCTTGCAGGAGACAACTTGAAGGGCTTTGGTGGTATAAATACCCTGCTTTAAATGGATTAAAGAAACCGCTCGGTCGCCTGTCACCGCCACacacaggggagggagagagagagctggaggagacaggaggaggaacaTACTGGAACTTACAGAAGGAAGAGGAAGGAGTTGAGGTATCTAGTCTGTATATCGGACAGTGgttggtacgtgtgtgtgtggaagaaAACATCAACTCGTCTACTGTTCTCTATGACCGGCTGCTCTGAACTCACCTGGacagacagatgagaagGAGAGAACACAGGGAAGGACAGTAGTGAATCAGATAGAGCTGCAGCTGCACCTCGTCGGCAGAGGACTACAGACTACCCACCAAAACGACCGGCTGGCTGACCGACCGACCGACTACTCCCCTTCGGTGGCTTTATTGAATGGGACCCTGGGCACAGAGCGGGGCTGGAGAATTTAAAATACGTGTCCCTCAGGAGTACTCCTGTCCTACACGCGTAGCTGTGCCCCGAGCAGCGAGCTGCGAAACACACAGCCAATAAATCAATAGCAGGGACCTCAGATTCCTCCATTACCACCTTCCCCCCCCGGCTGGCCTGGCGGAGGACAGCAGCAGAGCTACAGATGAGAACCTGCTGACCAGGGCCTAACCACCACAGCCCCTGGAGGACAGCCCCTGGAGGACAGCCGTGGAGGACAGCCCTGGAGGACAGCCGTGGAGGACAGCCCTGGTTCTGGACCCTCTCTAACCATCAACACAAGACAAGGGTGTTCTGACTGCAGTGGTGAGGAGGGCGGAGGCCTGGTTGTGGTCCCTCTGGTTCCATTTGGAGCTACAATACACCCGAAGGCAGCTAAACACAGAGAAGCCCACAATGACATCCTGAAAATACTTATTTTATAgttattttctctctcctcttattTCTAGACCTTCAAGTCCTTGTGTTTTTATTCAAGCAGGTTTTTACACAGGGAGAAAATAACACGAGTATAAGCATTGTCCGTGATGATGCTTTTTGAGGATTACGTCTTGATGTTTGACAGTTACAGGGAAATTGAATTCAGGCTTTAAAACCCCGTCCCAATATTTCCCATGTCCTCTGTCGCTACAGTAATCAAGGTTGTCCACGTTCAGAGTGTTATTTGAGACTGAGCAACAATAGCATGTTCATGACCGTATACACACTCCATCTCatgtgagaggagagacaagggccCCAGCTTTAATCCACCGGCCCCTGGAACAAATCATCTGACGTGTGAAAAgaaaaagacacaacacaacagaacagaacagaacccaacagaacacaacagaacccaACCCAACAGAAcccaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2206395 lncRNA upstream 28141 38681804 ~ 38692641 (+) True G1929286
TU2206391 lncRNA upstream 31758 38682223 ~ 38689024 (+) True G1929284
TU2206372 lncRNA upstream 75111 38643981 ~ 38645671 (+) True G1929269
TU2206366 lncRNA upstream 91862 38628488 ~ 38628920 (+) True G1929265
TU2206365 lncRNA upstream 95205 38625322 ~ 38625577 (+) True G1929264
TU2206407 lncRNA downstream 25807 38762391 ~ 38763052 (+) True G1929291
TU2206311 lncRNA downstream 26619 38763203 ~ 38765223 (+) True G1929223
TU2206440 lncRNA downstream 76107 38812691 ~ 38813024 (+) True G1929320
TU2206441 lncRNA downstream 76855 38813439 ~ 38814016 (+) True G1929321
TU2206316 lncRNA downstream 79806 38816390 ~ 38817249 (+) True G1929228
XM_036961980.1 mRNA upstream 67771 38590146 ~ 38653011 (+) False ppp1r13l
XM_036961981.1 mRNA upstream 67771 38590159 ~ 38653011 (+) False ppp1r13l
XM_036961984.1 mRNA upstream 67771 38590159 ~ 38653011 (+) False ppp1r13l
XR_002470453.2 mRNA upstream 193015 38526884 ~ 38527767 (+) True LOC110503272
XM_036961232.1 mRNA upstream 197616 38463435 ~ 38523166 (+) False rasgrp4
XM_021581659.2 mRNA downstream 885 38737469 ~ 38757769 (+) True tmem91
XM_036961888.1 mRNA downstream 34256 38770840 ~ 38793470 (+) True bckdha
XM_036962171.1 mRNA downstream 108898 38845482 ~ 38932575 (+) False bicra
XM_036962173.1 mRNA downstream 108898 38845482 ~ 38932575 (+) False bicra
XM_036962174.1 mRNA downstream 108898 38845482 ~ 38932575 (+) False bicra
TU2206306 other upstream 85390 38590181 ~ 38635392 (+) True ppp1r13l
TU2206278 other upstream 207677 38509846 ~ 38513105 (+) True G1929196
TU2206073 other upstream 522258 38197898 ~ 38198524 (+) True G1929037
TU2206015 other upstream 613556 38092415 ~ 38107226 (+) True LOC110511668
TU2206018 other upstream 635072 38072198 ~ 38085710 (+) False LOC110511668
TU2206305 other downstream 195255 38931839 ~ 38932549 (+) True bicra
TU2206559 other downstream 284249 39020833 ~ 39048693 (+) True spred3
TU2206900 other downstream 811228 39547812 ~ 39549780 (+) True G1929664
TU2207080 other downstream 1137694 39874278 ~ 39877275 (+) True G1929808
TU2207096 other downstream 1151743 39888327 ~ 39889155 (+) True G1929816

Expression Profile