RNA id: XM_036962146.1


Basic Information

Item Value
RNA id XM_036962146.1
length 5698
RNA type mRNA
GC content 0.59
exon number 9
gene id bcl9l
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 43299528 ~ 43420475 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcagtggctggctggtaatgtgtgtgtgaatgctatGGACACAAATGCAACGTCCTGCCTTTCCACAGCGCCGATACCGGAGTCATGATCTGCCGTTTGTTCGAGAGGACGCGTCCTCCGTTTTTGAACCCTAAAGTCTAAACGTGAAAACCTCGTATGGTTTTATCACCGTTgtcgagaaaaaaaaaacaccctGCAATTGCACCAGAACTGGCTACGGTTTTTTAAACCCGGGAGGAACCTTGCGCAGTGCTAAAAAAATAAGATAAGAAGGAGCAAAGCGGTTGCAGCCTCTTCGGTGGGGAAATGTCGGTTTGGCCGTCACTCCTGACACCACATCGGCCTCCTCAGATACCAACGAAAATGGGgttaTTCTGTGGTCAGTGAAGAGTcaaggagcagcagcagcaatatgCCCCAGTGTGTCAGCTGAGACATGGACTGAGCTGTGTAGACAAGCAGCAGTGTGACTTCAAACAGACGGACGGACACCACATCGTCTGTACCCCTACCCCAGACCCACCCCAGCCGTTCAAATGCACCCTGACAATAAGCTGACCAATCATGGCAAGCAAGTGAGCAGCGACAGCCAATCCCAGCTCTCCAATGTGACCCAGCAGCAGGAGGGGGCCAATAAGGGCCTGGGGGCGGGCAACCCTGGCCTGAAGGCTGTCAGCCAATCGGTGAGTGGCGTTGGGGGGATGATgaagacgaagagagagagaagtgtgtccATGGACTCTGGGGAACAGAGAGACACTATCACCCCTGTGCAGGAGCCTGACGCCAAAGTAGAAGGCGTGATGCGCAGTAAACGGCGGTGTGTGTTGGAGAAGAAACAGCCGTACAGTGGAGATGAGTGGTGCTCTGGCCCCGacactgaagaggaggaggacaagcCACACCCTGCTACACACCggCCTCTCCAgggtctctccggcccatcctccAAAGCTGGGCCAGTGCCCCTCCCCCCTGACCCAGCTCTGACCCCTGGGATGGGGCGTGGTCTGGGACCaggaggtcaaaggtcagagatGCCTCGCCCTGCTCAGCAGGTGGTCTATGTCTTCACTACCAGCCTGGCCAACAGtgctGCTGAATCGGTGATGCACGGCCACTCAGACTCTATTCTCCTGTTCCACCAGCAGAACGTCCCACGGACCAAACAACTGGAGCAGTGTGCCCCATCAGGGAAACATCCCAGTCTGTCAGGGCAGCTGAGCTCCAGCAGCACCCCTCCCATGGGCACCCCCAAGTCCCAGAGCGGCACCCCCAGACCGGCCTCTGTGGTAGGGAGCCACCTTCAGGCTGCGGGAAGCAGGACACCCTCTTCCACGGGACACCCCGACTCTGAGCCCCCCCAGAGCAGACCTGGGGGTCTTGGAGCCTCAAATAACATTAGCAGTACTCCCTCCCACCAGCCAGGGAACGCTGTTGCACCTATACCTTCTGGCCCAGGCCCTGGGGGTGGAGGTcgtggaggggaggggaaaggggtgCTGCCTCACGCCAGCGCGGGGGTGTCTCCGTCGGGTAGCCCCTCGGTGCTCTCAGCCCACCTGCAGGTCGATGTGGGGGCGAGGGGCGGGGGTGGTCCGGGGGGTAATGGAGGAGACGGGGGTCTGTCTAAAGAACagctggaacacagagagaggtctCTACAGACCCTCAGGGACATCGAGAGGCTTTTGCTCCGCTCCGGGACAGCAGGGGGCGCCGGAGAGCCACCAGGCCCCAACAACAACCccaacagtgtaaacaacaatAACACAGAAGGTAGTGGCGGCGGTCCGCAGGAGGACGCGGAGAATAGCGGTAATAATAACAACGATGCTAACAACATGTTGCTTCCCCCTATGGGCAAGATGAAGAAGTACGAGGAGCCTCTCAGGTCCATCATCTCCCAGGCGCAGCATCTGGGGGGGGCAGGGGGGATGGACGGCTCTCCCGTGGGGGGTCCCCACCACCCCGACCGCCACCTCCACTCCCCCGGGGGCCTGGACATGGGGCCCCTCTTGGGTCCTGACGGACTGACCCCAGAGCAGGTGGCCTGGAGGCAGCTGCAGGAGGATTATTACCAGGAGAAGAGAAGGCAGGAGGAGCTTCAGCCtaaccctcacacacacccacagcacTTCAGATTGATGCAGGAGATGAGTCCCCCGGTTATGATGAGGGGTCCCCCTCCGCCATACCACAGCAAGTCTGGGGAGCAGCAGTGGGGGCCTGGGGGGCCCATGATGGGTCCGGGAGGAATGGGACCGGGAGGGATGGGGCCCGGTAACCCTCGGATGATAGACATGCACCAGGAGGGGCCCCGGGGGCCACGGTTCCTGGGCCAGATGCAGAGGGTTCCCCCTGGAGGGGGGGGGTTCCCAAGCAGTCCTGGAGGGGTGTTATCCATCGAGGGTCTCAGCCCCCAGCGGGCAGCCAGGCCAGGCATGTGGATAGAGGACCTTCCCCCCAACATGATGGGTGGTGGCAGGGGGCCATTCTACCATGGGGGGCCAGGTGGGGGACCCCCCCAACACATGCAGGGTGACCCTGAGCGCATGCTGACCCGGGAAGATATGTTCCGTATCATGGAGAAGAGGCAGCTACAGGGGCTCCAccacctggagctggagaggaTAGTCCAACAACAGGGTATGGGGGGCCCCAGGATGATGGAGGGGCCAGGGGGGTTCCCCAACCAGGGGATGGGCAGAGGGCCAGGATCAAGGGGGGACCCCATGGACTTCCTAGGATCCAGGGAGATGATGGGGTCCCCGGGCGGTGGTGTAGGAGGAGGGGGACCCCAGATGAGAGATCTGGTAGACTCCTCTCTCGGCCCAGGGGGGATGAACATGAACATGAACGTGATGAACCAGCAGCAGCAGATGATGCTACAGaagctgagaggaggaggaagaggaggaggaggagggccactAGAGGGTCCTTTAAGGGACTTGCTGAGCCAAGAGGACATCGCTCGGATCCGGGCCGCCCAGAATGATGCAGGACACGGAGGGAGTAAAGTGATGCTCCAGGGACCAGACGGCCCGCTCCACTTCCCCAACCAGGGGCCCTTCCCTGGGGGACCGGGAGGAGGCGATGGGGGTTACCTCCAGGGGCCCGGGGCTAACATGTTCGGCTTGCCTGACCAGCATGGTGGGGGGCCTCACATGGGGGGTACGTCTCGCCTCAGCCACATGCccatgggtggtggtggtgggggaccCCGGGGCGCAGACCTCGGCCCCCACCACCCTTCGGACCTGTCCATCAACGTGAACCCCGGTATGGTCTCCCCGGCGATGCCCCCTCCCCCTCACCAGCTCAAGTCTCCATCCCTTAACCAGGAGCCATCGCCTCTCATGAACTCTCCCGCCGCGGGACTTAAGTCCCCCTCTCAGATATCCTCCGCTGGGGGTCCTCAGAGCCAGCAACACCCCCTACCCCCTGCCTCTGGGGCCGggaccccctcctcttcctccatgaaGTCTCCCCAGGTGATGGGCCCCTCCCTGGTTATGCGCTCCCCCTCAGACTCCCCTGGACGTCTGAAGTCTCCAGCCATGGTGTCGTCTCCAGGGTGGACATCCTCTCCGAAGACCGCTCTACCCAGCCCTGGGGGACTTAGCAGTGGGAAGGGGCTGGGGAACGGAGGCAGCAGCTCCACAGAGACTGGACCATCACTGCCCCCCAGGAGTTCTAACTCCACCCCTATCAGCCAGCCTGGTTCCATGGCTCCCAGCATGCCCTTCACCTCATCGCCAGACAACCCTCCTACTCAGAACCCGCTCTCCCTCATTATGTCACAGATGTCCAAGTATGCCATGCCTAGCTCCACCCCACTCTACCACGACGCTATCAAGACCATTGCCACCTCCGATGACGAGATGATGCCAGATCGCCCTCTGCTGTCCGGAGTCAACATCGGAGGTAACCCAGGGAACCATCAGGGCTCTATGATGCTGTCCCAGAGTTCCATTGGGCCCCACAGTGGCCAGCTGTCCCCCAACCCAATGGGCCTGAACGGTATGAACCCTGCCATGATGGGTGCCGGAGGGGGACCCCTGGACAGGATGGGGTACAGCTTGTCCCCCATGCACCCCCAAAACCAGATGGGAGGGTTCCCTCGCATGCAGCACCCCTCTCACGGAGGCCCCATGCACTCCCCTCTGGGCGGTATGCCCCCCCAGTTCTCCCAACAGAACCCAGAAGATGTTATCCCCCCCCAGCAGCTGCAGCACATGCTCAGTAAGGGCATGTCCCACCCCCACCAGCGCGGCCCCCACCCCTCGGACTCCTTTTTGGGCCCCGACGGCCCCGACCTGAGTGACGTCATCCGACCGACCCACTCTGGCATCCCGGAGTTCGACCTGTCTCGTATCATCCCCTCCGACAAGCCCTCCTCCACCCTGCAGTATTTCCCCAAGGCAGAGGGCATGTCCGGGGTCCAGCAGGGCCAGGGGAACCACCCTAACCCCCACCAGGGCCAGCCTGGCTCCCAGGGCCCTGGCCCCCTTCCTCCACAGCTGCTGAAACAGCTCTCTGCCCCTGGCCCTCACAGCAATGCCCCCTCCTCCAACCCTCACATTGCTAACCTGCAGAACATGATGGCAGAACAGCAgctgcccccccacccctcccactGCGGAATGGGTAGACATGGTATGGCGGGGATGCCCCAGGGGGGATCCAGGGGCATGGGGGgtccgggtggtcacatgatgcATCCTGGACACATGATGGGGAGGACAGGTATGGGGCCAGGCCCCACCCAGCAACAGCTTCAACAGCAGGCCATGATGGCGAACAGCCTCCTCCACGGCGGCCACCTTGGCCCCCAGCCCCACCCATCCATGATGTCTTCCCAACAACACAGCCTAATGGCCCAGCAGAACCTCATGCTGATGCAGGCTAAGCAGAGAAGTATGGGCCTCCCTGGGGACCCATTCGGCCAGCAGGGGGGATCCCTCATGTCCCCTCAGGGCCCCCTGATGGGACCGGGCCCCCCACACCCCCAGGGTGGGATGATGGGCCCCGGCATTGGCCCTGGCTCCCAGGGGCCACTCAGACAGAGAGGTATGTCCCTGGACAGTCCCCTAGGCTACGGCCCTGGCTAACATGCCCTGCTGATCCTCCTGATCCAACAGCCTCCTGGTACATGTTTGTGGtcaaaatggccccctattcactacatagtgtgTTTGGGATGCAGAATTACTGTAAAAACCTTCTTTTCAATAGGGTGTTTTTCCATTGTCTCATATGTTTTCATCAATGTTAATACTGTTATTATTGCTTCGAATGGTTAAACATCGATTGAGTAAAAACtgataaaaaaaagaataataatattGAAGAGCTGTCATGACAACGGTTTAATAAAGATATCTGAAGCCATTTTCTACAATGTCTGTAAAATATGGAGCCTATATTTCACAGATGACTGTGTTGGTTTTGGACGAGGTTTACGGTTGTGAGGCAAAGCCTATTGGTTTATATATGTTTGATATCATTGATTATTTTTCTCCTCCGGCTACCAAActggaatatataaatatatatgatatatatatatatatatgatatatatatatagttgctGTATATAAGATGCAATTTGTGATTGTTTGCAAATGTTCTGTATAACTGTGTTTTAATAGAAGTCAAAAAAATGAAAGAATACTGAACTCTATCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2212557 lncRNA upstream 35445 43263882 ~ 43264084 (+) True G1934136
TU2212422 lncRNA upstream 79229 43219756 ~ 43220300 (+) True G1934027
TU2212409 lncRNA upstream 90434 43208789 ~ 43209095 (+) True G1934019
TU2212408 lncRNA upstream 91202 43206401 ~ 43208327 (+) True G1934018
TU2212407 lncRNA upstream 91784 43206121 ~ 43207745 (+) True G1934017
TU2212656 lncRNA downstream 3305 43423780 ~ 43430519 (+) True G1934203
TU2212673 lncRNA downstream 22806 43443281 ~ 43445105 (+) True G1934210
TU2212680 lncRNA downstream 33197 43453672 ~ 43457714 (+) False G1934215
TU2212682 lncRNA downstream 33197 43453672 ~ 43454794 (+) True G1934215
TU2212649 lncRNA downstream 45687 43466162 ~ 43468153 (+) False G1934198
XM_036961315.1 mRNA upstream 86817 43066287 ~ 43212712 (+) False cdon
XM_036961316.1 mRNA upstream 86817 43066287 ~ 43212712 (+) True cdon
XM_036961682.1 mRNA upstream 514369 42723531 ~ 42785160 (+) True prdm10
XM_036962011.1 mRNA upstream 964059 42140069 ~ 42335470 (+) False LOC110503413
XM_036962012.1 mRNA upstream 966072 42140069 ~ 42333457 (+) False LOC110503413
XM_036961768.1 mRNA downstream 19538 43440013 ~ 43465243 (+) False ddx6
XM_036961769.1 mRNA downstream 19560 43440035 ~ 43465243 (+) False ddx6
XM_036961770.1 mRNA downstream 19560 43440035 ~ 43465243 (+) False ddx6
XM_036961771.1 mRNA downstream 19603 43440078 ~ 43465243 (+) False ddx6
XM_036961772.1 mRNA downstream 21003 43441478 ~ 43465245 (+) True ddx6
TU2212382 other upstream 140963 43158103 ~ 43158566 (+) True G1933999
TU2211865 other upstream 764546 42531718 ~ 42534983 (+) False G1933574
TU2211866 other upstream 764546 42531718 ~ 42534983 (+) True G1933574
TU2211839 other upstream 798539 42495580 ~ 42500990 (+) True G1933563
TU2211452 other upstream 909268 42389427 ~ 42390261 (+) True G1933255
TU2212654 other downstream 12973 43433448 ~ 43435352 (+) True G1934201
TU2214548 other downstream 1679827 45100302 ~ 45103958 (+) False G1935694
TU2214547 other downstream 1681649 45102124 ~ 45103958 (+) True G1935694
TU2214550 other downstream 1683657 45104132 ~ 45104500 (+) True G1935696
TU2214794 other downstream 1868035 45288510 ~ 45289135 (+) True G1935897

Expression Profile