RNA id: XM_036961771.1


Basic Information

Item Value
RNA id XM_036961771.1
length 2433
RNA type mRNA
GC content 0.52
exon number 13
gene id ddx6
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 43440013 ~ 43465245 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCGAACCGCAGCTTGACAGCAGAGAAGTCCACAACAACCCAACAGATCATCTCAACAATACACGGTGACTGTTCACTTAATCCTCTCCTCCTAGACGATATTTCACctggGTGAAGAGTTGTGGGGATGAAGGTATTTGAGACAGGTGTGACCATGCAGCCTCTGGCGTAAGGTGCTCCGACCGGTGCCACACCAAGCCGCGATACACCTGAGTTATTATTcttcatttttattttgtttcttgTCAGTCATTTTGTTGACATTTTTTTTTGATGAGATGTTCCGCAAAGAACAATACTATtgaggaacaggagaggagacaatTGCTTCTATCTAATTACATTTGTTTTGGATAACAGCCCGTGAGAAGTCAGACTATTCCTCAAGATTtatctcccctccccccctcccccaccaccacaaTCAGAATAAGGACAGTGGCTTGGATAATTGACTAGCCATGAGTACCGCCAGTACCCAGAACCCAGTGATACTGGGCCATTCCAACCAGAATGGCCAGCTCCGAGGCCCGGTGGTGAAGCCTGCAGGAGGCCAGGGCAGCGGAGGAGGCAGTCATCAGACACAGCAGCCCGGCCATATGAAGCAGGCCTCCAGCACAATCAACAACGGCACTGGGCCTAGCATCACCCAGCTGGCTAAAGCTACCCCCACAGCCAATACTGTCATCAAGCCTGGAGATGACTGGAAGAGGAATTTGACGCTCCCTCCAAAAGACATGAGGATGAGAACTTCGGACGTAACGGCTACTaaaggcaatgagtttgaagacTACTGCCTGAAGAGGGAGCTACTGATGGGCATCTTTGAGATGGGCTGGGAGAAACCCTCTCCGATACAGGAGGAGAGCATCCCCATAGCGTTGTCTGGGAGGGACATTCTGGCCAGGGCCAAGAACGGGACAGGAAAGAGCGGAGCCTACCTCATTCCCTTACTGGAACGCATTGACCTGAAGAAGGACTGTATACAAGCTATGGGCATCGTTCCCACCAGAGAACTGGCATTGCAGGTGAGCCAAATCTGTATCCAGATCAGCAAACACATGGGAGGGGTCAAAGTCATGGCCACAACGGGTGGCACCAACCTCCGCGATGACATCATGAGGCTCGACGAGACAGTACACGTTGTGATTGCCACCCCTGGGAGGATCCTGGACCTCATTAAGAAGGGTGTGGCCAAAGTCAATCAGGTTCAGATGATGGTTCTGGATGAGgCAGACAAGCTGTTGTCCCAGGACTTTGTCGTGATGATGGAGGAGATATTGAGCTACCTGCCCAAACAGAGACAgattctgctctactctgctacCTTTCCTCTCAGCGTGCAGAAGTTCATGAACTCCCACCTGTCCAAGCCCTACGAGATCAACCTGATGGAGGAGCTGACCCTGAAGGGGGTCACCCAGTATTATGCCTAcgttacagagagacagaaggtccACTGTCTCAACACGCTCTTCTCCAGGCTCCAGATCAACCAGTCTATAATCTTCTGTAACTCGTCTCAGAGGGTGGAGCTGCTGGCCAAGAAGATATCTCAGCTGGGCTACTCGTGTTTCTACATTCATGCCAAGATGAGACAGGAGCACCGTAACAGGGTGTTCCACGACTTCAGAAACGGGCTCTGCCGGAATCTGGTCTGCACAGACCTCTTCACAAGAGGTATCGACATTCAGGCGGTGAATGTGGTGATCAACTTTGACTTCCCCAAGCTGGGCGAGACGTACCTGCATCGCATCGGCAGATCTGGTCGTTTTGGTCACCTGGGTCTGGCCATCAACCTGATCACATACGACGACCGCTTCAATCTGAAGGGCATTGAGGAGCAGCTGGGAACAGAGATCAGACCCATCCCCGGCAGCATAGACAAGAGCCTGTACGTAGCAGAGTACCACAGTGAGAACGGAGAGGTCAAGCTGTGAGGTGGAGGACGAACAGAGatcagatGAGACCCCCGTCCCCGTCGCCCCTCCCTTCTGATGTTACGCTCCCTTCTGTGTCCtggactatttttttttttttgtctttttttgttgttgttggataTCTAACTTCCCGTCTGTCGGTCTTCCTTCCTGTTTTTGGGTGCCACCTCATGGAAACGTGTACGATCTGTGAGGGACAACAAACCTGCAGAGGAACTCATGATGTCCCTGTTCTAGGGTCCTCTCTCTGCTGCGATGCACTGAAGACTACGACTACTAACTCCCACAGTACTGGGAGGAGGAAGGCAGGGAACGTGGAGAACTGTCTTTCAATGGAAATGGATTTGATCATTTCCATCTTTCTCCTGCTCCAATCTACCCTGAGCACTGCCTGCCAGTTAGCACTTACCCCCCCGGctctctcctccctgcccctccctccctccctcctccctgcccctcccccctccctcccccctccctgcccct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2212656 lncRNA upstream 9559 43423780 ~ 43430519 (+) True G1934203
TU2212630 lncRNA upstream 30768 43409043 ~ 43409310 (+) True G1934192
TU2212581 lncRNA upstream 116105 43323347 ~ 43323973 (+) True G1934152
TU2212564 lncRNA upstream 133402 43305996 ~ 43306676 (+) True G1934142
TU2212557 lncRNA upstream 175994 43263882 ~ 43264084 (+) True G1934136
TU2212649 lncRNA downstream 919 43466162 ~ 43468153 (+) False G1934198
TU2212651 lncRNA downstream 919 43466162 ~ 43467880 (+) True G1934198
TU2212634 lncRNA downstream 4280 43469523 ~ 43471503 (+) False G1934195
TU2212633 lncRNA downstream 4352 43469595 ~ 43471503 (+) True G1934195
TU2212715 lncRNA downstream 111432 43576675 ~ 43579791 (+) False G1934242
XM_036962148.1 mRNA upstream 19603 43299528 ~ 43420475 (+) False bcl9l
XM_036962146.1 mRNA upstream 19603 43299529 ~ 43420475 (+) False bcl9l
XM_036962147.1 mRNA upstream 19603 43299529 ~ 43420475 (+) True bcl9l
XM_036961315.1 mRNA upstream 227366 43066287 ~ 43212712 (+) False cdon
XM_036961767.1 mRNA downstream 7481 43472724 ~ 43491902 (+) True treh
TU2212654 other upstream 4726 43433448 ~ 43435352 (+) True G1934201
TU2212382 other upstream 281512 43158103 ~ 43158566 (+) True G1933999
TU2211865 other upstream 905095 42531718 ~ 42534983 (+) False G1933574
TU2211866 other upstream 905095 42531718 ~ 42534983 (+) True G1933574
TU2211839 other upstream 939088 42495580 ~ 42500990 (+) True G1933563
TU2214548 other downstream 1635059 45100302 ~ 45103958 (+) False G1935694
TU2214547 other downstream 1636881 45102124 ~ 45103958 (+) True G1935694
TU2214550 other downstream 1638889 45104132 ~ 45104500 (+) True G1935696
TU2214794 other downstream 1823267 45288510 ~ 45289135 (+) True G1935897
TU2214960 other downstream 2020100 45485343 ~ 45488875 (+) False G1936028

Expression Profile