RNA id: TU2205360


Basic Information

Item Value
RNA id TU2205360
length 281
lncRNA type intronic
GC content 0.54
exon number 2
gene id G1928456
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 36726314 ~ 36727143 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggctgtagtcacagacacacagacaggcaggctgtagtcacagacacacagacaggcaggctgtagtcacagacacacagacaggcaggctgtagtcacagacacacagacaggcaggctgtagtcacagacacacagacaggcaggctgtagtcacagacacacagacaagcagGTTgtagtcacagacacacagacaagcaggctgtagtcacagacagacatgcaggctgtagtcacagacagacaggcaggctgtagtcacagacagacaggcagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2205348 lncRNA upstream 31427 36694628 ~ 36694887 (+) True G1928446
TU2205329 lncRNA upstream 53416 36672668 ~ 36672898 (+) True G1928434
TU2205326 lncRNA upstream 57932 36668045 ~ 36668382 (+) False G1928432
TU2205327 lncRNA upstream 57932 36668045 ~ 36668382 (+) True G1928432
TU2205298 lncRNA upstream 125729 36599239 ~ 36600585 (+) False G1928408
TU2205366 lncRNA downstream 14677 36741820 ~ 36742384 (+) True G1928458
TU2205331 lncRNA downstream 24914 36752057 ~ 36752666 (+) True G1928436
TU2205369 lncRNA downstream 30114 36757257 ~ 36759812 (+) False G1928461
TU2205370 lncRNA downstream 30114 36757257 ~ 37151803 (+) True G1928461
TU2205408 lncRNA downstream 112616 36839759 ~ 36857237 (+) True G1928498
XM_036961766.1 mRNA upstream 165578 36541464 ~ 36560736 (+) False LOC110503243
XM_036961765.1 mRNA upstream 170714 36541464 ~ 36555600 (+) False LOC110503243
XM_036961763.1 mRNA upstream 170953 36541463 ~ 36555361 (+) False LOC110503243
XM_036961764.1 mRNA upstream 170953 36541603 ~ 36555361 (+) True LOC110503243
XM_036961674.1 mRNA upstream 213830 36505888 ~ 36512484 (+) True bud23
XM_036961113.1 mRNA downstream 200768 36927911 ~ 36933490 (+) False LOC110503269
XM_036961112.1 mRNA downstream 200770 36927913 ~ 36933490 (+) False LOC110503269
XM_036961114.1 mRNA downstream 200776 36927919 ~ 36933490 (+) True LOC110503269
XM_021581639.2 mRNA downstream 215752 36942895 ~ 36960462 (+) True LOC110503268
XM_036961647.1 mRNA downstream 258730 36985873 ~ 37077986 (+) False LOC110503264
TU2205324 other upstream 63817 36661874 ~ 36662497 (+) True G1928430
TU2204948 other upstream 555843 36141229 ~ 36170471 (+) False G1928169
TU2205478 other downstream 330863 37058006 ~ 37063544 (+) True LOC110503264
TU2205555 other downstream 446463 37173606 ~ 37183522 (+) True urb1
TU2205476 other downstream 474716 37201859 ~ 37203186 (+) True LOC110503265
TU2205616 other downstream 564519 37291662 ~ 37292416 (+) False LOC110503436
TU2205711 other downstream 707760 37434903 ~ 37435441 (+) True G1928752

Expression Profile