RNA id: TU2206083


Basic Information

Item Value
RNA id TU2206083
length 3341
lncRNA type antisense_over
GC content 0.41
exon number 8
gene id G1929039
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 38202503 ~ 38254053 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacacacacacacacacacacacacacacacacacacacacacacacacacacacaaaacgagGAAGGATTTGCCAATTCATCTTAAAATAATCTGTTCAATTTATTAATCTTGTATTGAAACACAGGATTCAGTCAGGCAACAACATTCTAATAGTCAACTGGTCAACATTCTAATagtcaacaggtcaacattctaatagtcaacagGTCAACATTCCAATagtcaacaggtcaacattccaatggtcaacaggtcaacattctaatagtcaacaggtcaacattccaatggtcaacaggtcaacattccaatagtcaacaggtcaacattccaatggtcaacaggtcaacaggtcaacattctaATAGTCAAGAGGTCAACATTCTAATAGTCAACAAGTCAACATTCTAATagtcaacaggtcaacattctaATAGTCAACAGTTCAACATTCTAATagtcaacaggtcaacattttAATAGTCAATAGGAGTCAACATTCTAATagtcaacagGTCAACACTCTTATAGTCAATAGGAGTCAACAGGTCAACACTCTTATAGTCAACAGGTCAACACTCTTATAGTCAATAGGAGTCAACAGGTCAACACTCTTATAGTCAACAGGTCAACACTCTTATAGTCAATAGGAGTCAACAGGTCAACACTCTTATAGTCAACAGGTCAACACTCTTATAGTCAACAGGTGATCTCATACTAATACATCATCACAGCCCTCCGTGGATCACCACACATACAGGTATACACCTGCGTgtgaattacacacacacacacaccgctgtgGTAACACACTCCAGGAGTCACATCTCCTCCTAACACAGTACAAGTTAGTCAGGACATTACTcaacatggagagagagtgtgtatgagttagcctgtgtgtgtgtgagacggtgTGTAATGTTTCTGTCTGGTTTCTTATTCTAGACCAGTCTGACATCACGCGTGAGGTTTTACTTCCAGAGAAAAATTAAATAATATGcacattctcccccccccccaaaaaaaaataactATGATACTCTAACCTGCCAGAAGAAAAATCACAAAAGCTTTTCGGTGCAAACTGGCTACAGTGTTCGTCTCCGTTCAGCTATCTTTTTAACCCTTGTGTATTCGTCATAACAGGTAAAGTATCATTATTATTCACTGTGAACAAAGTAGCGGAGAAGGCcttaaataaaacaatacacttATGTTATTTATTTGATGTTAATGTGTCATTTTTTAGTCCGGCCCTTCTGAGTAGCGCTGTCCTTATCACACTACGGACAACATTTAGAGTAGACATGAATAAATATAATAATGACTATTCACTGTATTAGCCCTGTGCATTAAGATGGTATAGAACACGCGTCAGCCCAGCGTCAATACGAGGGGGCTATAAGACCTGTCTTTAGGAGAGTTGTCTAGGAGAGATGTCTATAGGAGAGATGTCTATAGGAGAGATGTCTATAGGAGAGATGTCTTTAGGAGAGATGTCTAGGAGAGATGTCTTCAAGAGATATGTCTAGGAGAGATGTCTAGGAGAGATGTCTTTAGGAGAGATGTCTAGGAGAGATGTCTAGGAGAGATGTCTCTAGGAGAGATATCTAGGAGATATGTCTTTAGGAGAGATGTCTCTAGGAGAGATGTCTCTAGGAGAGATGTCTTTAGGAGAGTTGTCTTTAGGAGAGATGTCTAGGAGAGATGTCTCTAGGAGAGATGTCTATAGGAAAGATGTCTTTAGGAGAGATGTCTCTAGGAGAGATGTCTAGGAGAGATGTCTTTAGGAGAGATGTCTCTAGGAGAGTTGTCTTTAGGAGAGATGTCTTTAAGAGAGTTGTCTTTAGGGGAGATGTTTAGGAGAGTTGTCTTTAGGAGAGATGTCTAGGAGATATGTCTCTAGGAGAGATGTCTTTAGGAGAGATGTCTTTGGAAGAGATGTCTAGGAGAGATGTCTTTAGGAGAGATGTCTTTAGGAGAGATGTCTAGGAGAGATGTCTCTAGGAGAGATGTCTTTAGGAGAGATGTCTAGGAGAGATGTCTAGGAGAGATGTCTAGGAGAGATGTCTTTAGGAGAGTTGTCTTTAGGAGAGTTGTCTTTAGGAGAGATGTCAGAAAAGATGTCTCTAGGAGAGATGTCTTTAGGAGAGATGTCTAGAAGAGATGTCTCTAGGAGAGATGTCTAGGAGAGATGTCTTTAGGAGAGTTGTCTTTAGGAGAGATGTCTTTAGGAGAGCTGTCTAGGAGAGATGTCTTTAGGAGAGATGTCTTTAGGAAAGATGTCTCTAGGAGAGATGTCTTTAGGAGAGATGTCTTTAGGAGAGATGTCTAGGAGAGATGTCTTTTAGGAGAGATGTCTTTAGGAGAGATGTCTAGGAGAGATGTCTTCAGGAGAGATGTCTAGGAGAGATGTCTTTAGTAGAGATGTCTTGAGGAGAGATGTCTTTAGTAGAGATGTCTTTAGGAGAGATGTCTTTAGGAGAGATGTCTAGGAGAGATGTCTTTAGGAGTGGTCTGTGGTAGCCGATTAGAACACTGTGTGGTCTGTGGTAGCCAATAGAAACTCTGTGTGGTCTGTGATAGCCAATAAGAACACTGTGTGGTCTGTGATAGCCAATAAGAACACTGTGCGGTCTGTGATAGCCAATAGGAACACTGTGTGGTCTGTGATAGCCAATAGGAACACTGTGGGGTCTGTGATAGCCAATAAGAACACTGTGCCGTCCGTGTCAGCCACTAGGATCTCTACATCAGATCACACAGGTCATAGACAGGAAGAGACACATCGTAAGACTTCAGAGTGCAAAAACAGGGTTTGTCTAAAGTCATCATATTGTCCTGTAGGATCAGACAACCTGCCTCTAACCTGTTTACTCCAGATTGACTGCTAATAGCCAGATCAACATCAGTTATAAAATCtctagagagaaaaaaaagagagtgaggagagaccTGGGGTGTGTGACTGCTCCCTAGTGGACAGAAGAGGCACTGCTATCTAATGCTCTCACCCCCACTGATCATTATCAAGCAGTGGGAGAAATACACCAACAATTACAGAAATAGCTCATTTAAAGGCATACACAAAAATCAAGACATTCTTACACGAGGACATTAATGGCATTTATATTAATACAATCTCAAACAAGAGTGATTATAATAATATTAAGGAAAAGAGCACTACTTAAGACATTAAAGCACGTTTGTTTACCATGAGAGTTAGGCACTATGCTGTATTCAgctctacagaaacacacactgacagagaggcagcgctgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2206059 lncRNA upstream 9500 38192423 ~ 38193162 (+) True G1929025
TU2206016 lncRNA upstream 11212 38184181 ~ 38191450 (+) True G1928986
TU2206013 lncRNA upstream 76700 38124724 ~ 38125962 (+) False G1928984
TU2206014 lncRNA upstream 76700 38124724 ~ 38125962 (+) True G1928984
TU2206043 lncRNA upstream 98204 38103237 ~ 38104458 (+) True G1929011
TU2206136 lncRNA downstream 17193 38271246 ~ 38271703 (+) True G1929076
TU2206238 lncRNA downstream 185651 38439704 ~ 38439919 (+) True G1929171
TU2206264 lncRNA downstream 212631 38466684 ~ 38467546 (+) True G1929183
TU2206268 lncRNA downstream 218738 38472791 ~ 38473249 (+) True G1929187
TU2206272 lncRNA downstream 222314 38476367 ~ 38476660 (+) True G1929190
XM_036962127.1 mRNA upstream 80884 38039863 ~ 38121778 (+) False LOC110511668
XM_036962080.1 mRNA upstream 223532 37976645 ~ 37979130 (+) True LOC118944107
XM_036961882.1 mRNA upstream 229116 37946663 ~ 37973546 (+) False LOC110511319
XM_021581623.2 mRNA upstream 760016 37440826 ~ 37442646 (+) True or112-1
XM_036961563.1 mRNA upstream 770545 37431071 ~ 37432117 (+) True LOC110503430
XM_036961232.1 mRNA downstream 209382 38463435 ~ 38523166 (+) False rasgrp4
XM_036961233.1 mRNA downstream 236835 38490888 ~ 38523166 (+) True rasgrp4
XR_002470453.2 mRNA downstream 272831 38526884 ~ 38527767 (+) True LOC110503272
XM_036961980.1 mRNA downstream 336093 38590146 ~ 38653011 (+) False ppp1r13l
XM_036961981.1 mRNA downstream 336106 38590159 ~ 38653011 (+) False ppp1r13l
TU2206073 other upstream 4138 38197898 ~ 38198524 (+) True G1929037
TU2206015 other upstream 95436 38092415 ~ 38107226 (+) True LOC110511668
TU2206018 other upstream 116952 38072198 ~ 38085710 (+) False LOC110511668
TU2205852 other upstream 568503 37633215 ~ 37634159 (+) True G1928851
TU2205722 other upstream 738024 37453537 ~ 37464638 (+) True G1928756
TU2206278 other downstream 255793 38509846 ~ 38513105 (+) True G1929196
TU2206306 other downstream 336128 38590181 ~ 38635392 (+) True ppp1r13l
TU2206305 other downstream 677786 38931839 ~ 38932549 (+) True bicra
TU2206559 other downstream 766780 39020833 ~ 39048693 (+) True spred3
TU2206900 other downstream 1293759 39547812 ~ 39549780 (+) True G1929664

Expression Profile