RNA id: TU2206363


Basic Information

Item Value
RNA id TU2206363
length 259
lncRNA type intronic
GC content 0.37
exon number 3
gene id G1929263
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 38622191 ~ 38625067 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agttaatgaTAGCTATAGGGTCAGAGTTAGTTAATGATAgctatagggtcagggttagttaatgatagctatagggtcagggttagttaatgatagctatagggtcagggttagttaatgaTAGCTATAGGGTCAGGGGTAGTTAATGATAgctataggGTTAGTGTATAGCAGTatatagggtcagggttagttaatgatagctatagggtcagggttagttaatgaTAGCTATAAGGTTAGTGTATagcagtgtata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2206357 lncRNA upstream 251 38621670 ~ 38621940 (+) True G1929262
TU2206348 lncRNA upstream 15195 38606611 ~ 38606996 (+) True G1929257
TU2206296 lncRNA upstream 46825 38573794 ~ 38575366 (+) False G1929213
TU2206298 lncRNA upstream 46825 38573794 ~ 38575366 (+) True G1929213
TU2206252 lncRNA upstream 51456 38569877 ~ 38570735 (+) True G1929174
TU2206365 lncRNA downstream 255 38625322 ~ 38625577 (+) True G1929264
TU2206366 lncRNA downstream 3421 38628488 ~ 38628920 (+) True G1929265
TU2206372 lncRNA downstream 18914 38643981 ~ 38645671 (+) True G1929269
TU2206395 lncRNA downstream 56737 38681804 ~ 38692641 (+) True G1929286
TU2206391 lncRNA downstream 57156 38682223 ~ 38689024 (+) True G1929284
XR_002470453.2 mRNA upstream 94424 38526884 ~ 38527767 (+) True LOC110503272
XM_036961232.1 mRNA upstream 99025 38463435 ~ 38523166 (+) False rasgrp4
XM_036961233.1 mRNA upstream 99025 38490888 ~ 38523166 (+) True rasgrp4
XM_036962127.1 mRNA upstream 500413 38039863 ~ 38121778 (+) False LOC110511668
XM_036962080.1 mRNA upstream 643061 37976645 ~ 37979130 (+) True LOC118944107
XR_005039418.1 mRNA downstream 95715 38720782 ~ 38736584 (+) False LOC118944104
XM_021581659.2 mRNA downstream 112402 38737469 ~ 38757769 (+) True tmem91
XM_036961888.1 mRNA downstream 145773 38770840 ~ 38793470 (+) True bckdha
XM_036962171.1 mRNA downstream 220415 38845482 ~ 38932575 (+) False bicra
XM_036962173.1 mRNA downstream 220415 38845482 ~ 38932575 (+) False bicra
TU2206278 other upstream 109086 38509846 ~ 38513105 (+) True G1929196
TU2206073 other upstream 423667 38197898 ~ 38198524 (+) True G1929037
TU2206015 other upstream 514965 38092415 ~ 38107226 (+) True LOC110511668
TU2206018 other upstream 536481 38072198 ~ 38085710 (+) False LOC110511668
TU2205852 other upstream 988032 37633215 ~ 37634159 (+) True G1928851
TU2206305 other downstream 306772 38931839 ~ 38932549 (+) True bicra
TU2206559 other downstream 395766 39020833 ~ 39048693 (+) True spred3
TU2206900 other downstream 922745 39547812 ~ 39549780 (+) True G1929664
TU2207080 other downstream 1249211 39874278 ~ 39877275 (+) True G1929808
TU2207096 other downstream 1263260 39888327 ~ 39889155 (+) True G1929816

Expression Profile