RNA id: TU2206718


Basic Information

Item Value
RNA id TU2206718
length 200
lncRNA type intronic
GC content 0.49
exon number 2
gene id G1929530
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 39311512 ~ 39311974 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctctctctctctctctctccctctgttctctctctctctctctctgttctctctctctctgttctctctctgttctctctctctctctctctctctctctctctccctctgctctctctctctctctctctctctctctgtgttctctctgtgttctctctctgttctctctctgttctctctgttctctctgttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2206714 lncRNA upstream 20177 39287698 ~ 39291335 (+) True G1929526
TU2206663 lncRNA upstream 107382 39203865 ~ 39204130 (+) True G1929495
TU2206661 lncRNA upstream 108574 39202681 ~ 39202938 (+) True G1929493
TU2206636 lncRNA upstream 163637 39147625 ~ 39147875 (+) True G1929468
TU2206635 lncRNA upstream 168253 39142629 ~ 39143259 (+) True G1929467
TU2206751 lncRNA downstream 66075 39378049 ~ 39399639 (+) True G1929560
TU2206753 lncRNA downstream 72984 39384958 ~ 39388137 (+) True G1929562
TU2206758 lncRNA downstream 77360 39389334 ~ 39390556 (+) True G1929564
TU2206797 lncRNA downstream 101534 39413508 ~ 39456657 (+) False G1929582
TU2206796 lncRNA downstream 132675 39444649 ~ 39456657 (+) False G1929582
XM_021581558.2 mRNA upstream 76473 39207177 ~ 39235039 (+) False LOC110503192
XM_036961823.1 mRNA upstream 76473 39208612 ~ 39235039 (+) True LOC110503192
XM_036962185.1 mRNA upstream 214800 39091519 ~ 39096712 (+) True LOC110503486
XM_036961567.1 mRNA upstream 220279 39087111 ~ 39091233 (+) True LOC118944042
XM_036962033.1 mRNA upstream 261836 39020800 ~ 39049676 (+) False spred3
XM_036962131.1 mRNA downstream 84049 39396023 ~ 39629211 (+) False LOC110503405
XM_036962133.1 mRNA downstream 128759 39440733 ~ 39629211 (+) False LOC110503405
XM_036962132.1 mRNA downstream 147683 39459657 ~ 39629211 (+) False LOC110503405
XM_036962134.1 mRNA downstream 148244 39460218 ~ 39629211 (+) True LOC110503405
XR_005039426.1 mRNA downstream 318689 39630663 ~ 39632379 (+) False LOC110503201
TU2206559 other upstream 262819 39020833 ~ 39048693 (+) True spred3
TU2206305 other upstream 378963 38931839 ~ 38932549 (+) True bicra
TU2206306 other upstream 676120 38590181 ~ 38635392 (+) True ppp1r13l
TU2206278 other upstream 798407 38509846 ~ 38513105 (+) True G1929196
TU2206073 other upstream 1112988 38197898 ~ 38198524 (+) True G1929037
TU2206900 other downstream 235838 39547812 ~ 39549780 (+) True G1929664
TU2207080 other downstream 562304 39874278 ~ 39877275 (+) True G1929808
TU2207096 other downstream 576353 39888327 ~ 39889155 (+) True G1929816
TU2207191 other downstream 713961 40025935 ~ 40028517 (+) False G1929891
TU2207202 other downstream 713961 40025935 ~ 40028517 (+) False G1929891

Expression Profile