RNA id: TU2207080


Basic Information

Item Value
RNA id TU2207080
length 2767
RNA type TUCP
GC content 0.46
exon number 2
gene id G1929808
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 39874278 ~ 39877275 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACCCAATATGACATCCACATGGTTCCACAGTCAACCCAATATGACATCCACATGGTTCCACAGTCAACCCAATATGACATCCACATGGTTTCACAGTCAACCCAATATGAAATCCACATGGTTCCACAGTCAACCCAATATGAAATCCACATGGTTCCACAGTCAACCCAATATGACATCCACATGGTTCCACAGTCAACCCAATATGAAATCCACATGGTTCCACAGTCAACCCAATATGACATCCACATGGTTCCACAGTCAACCCAATATGACATCCACATGGTTCCACAGTCAACCCAATATGACATCCACATGGTTCCACAGTCAACCCAATATGAAATCCACATGGTTCCACAGTCAACCCAATATGAAATCCACATGGTTCCACAGTCAACCCAATATGACATCCACATGGTTCCACAGTCAACCCAATATGACATCACATGGTTCCACAGTCAACCcaatatgacatcacaataacacaGATAGAATAACCAACTAGAATTCCACACTTGGCTAAAGTTTCAGAGCACTTACACAGACACAGGTTGCTCCACTAATATACgtctacacagagacacagctagcAGCAGACGAGTATCAAACGACCAGGTTATCCGAttatatttgagtcatttagcagacgctcttatccagagtaacatacaggagcaattaggattgTGCCTCGTTCAAAGCACATCGACATATTTTTTTTCCACCTAGGTCGGCATGAGGATTTGAATCAGcggcctttcggttactggcccaacactcttaaccgctatgCTACCTGTCGCGCCCGATTATCCGTTAGCCTCTTCATTGGCTCACAATGGGGGAATTAGCCTAATGCTGATACATTTGGTTGGAGTGGTTGAAGGTGATGTCCCCAGATGGTTTGTAGGGGAGTTCTCTTGGCTTGGAGAGATTAAACACTATCACCACCCTGAACCGGAGGgcactggtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagagctccTGTAAATCATCTATTTggggtaaagaaagagagaaaaacacattTATAAATTAAGTGCTGTAAAAAGACAGAAATAAAATCTAAAACATAAATACTGTACAAACATACCTCTTCTACTACAGCTCCCTAAAACAAATGCTTTAAAACACACGTCACTGCGGGAGTGGGATGTTGTTTCTCTTTAAATAGAACAAAAAATCTTGAAAATTATAAACACAAAAGTGATTTTAGGTGTGAGAACTagttgtatgtgtatgtttgtcaTAGGCTATGGAGAGACGAGCTGTGTTTTGTTCGAACGAGtgaagaaagtgtgtgtgtgtgtgcgtgtatgtttaTATAGTCTTAGTAGGTACCCTTGCCATATATTGCACATCGGTTACTTTTATGTTTACTCTTTAGTTTCCTTGTTCAGAGAACAGAGACGTTTAGTGTTCACTCCTTGTTCCAtccatttctcctctcctccctaggaTGGCCTTGTtccatttctcctctcctccctaggaTGGCCTTGTtccatttctcctctccttcctaggATGGAGTGTTAGGATGGCCTTGTtccatttctcctctcctccctaggaTGGAGTGTTAGAATGGCCTTGTtccatttctcctctcctccctaggaTGGAGTGTTAGGATGGCCTTGTtccatttctcctctcctccctaggaTGGCCTTGTtccatttctcctctcctccttaggATGGAGTGTTAGGATGGCCTTGTtccatttctcctctcctccctaggaTGGAGTGTTAGGATGGCCTTGTTccatttctcctctctttcctagGATGGAGTGTTAGGATGGCCTTGTTCCATTTCTCATCTCTTCCCTAGGATGGCCTTGTtccatttctcctctcctccctaggaTGGAGTGTTAGAATGGCCTTGTTCCATTTTTACTTCCATCAGTCCATCATTTGGCTTGTTGCAGAATTCACAATCTTCTTCCCATCAGTAGCCTTTCACCCTGTCTGCCTCAaccgctctctctttccttctctctccctatccttcaCCTAATCGGTCTGTCCTTATCCACACTTTTCTCTGGTCACTGTCCcaatctcttgctctctctctctttctctccctctctttccctctctctcacttgttccctccctctctcctagtaAAGTCTGTAGAGACAGAGTCCATGCTGAAACACCAGACACATCACTCAGTGATTAACAACACAGACAGTTGCATCAGAAcaaactaaaacaacaacagaaaccTGGTTTGAAAGCGACCCTGTAGTTTTTCAGCCTGGGCTAACAACACCCATGCACAGAGAGATCAGAAGACGGAGAAAATAACTGGACCTAATAAAAACGGGGGTGGGTTTTGAGGCGGAGGGGTTGGGTTTATGTGTGGTTTTTGCTGAGGGTGGGGTTCAAATGGGTCGGGGGACTCTCATTGGCTCAGACCCGGGGCAAGGGGCTTGGCCTCACATCCTCCAGGGCAGTATGTTGCTGGTGCTGAAGGGGTGGGTTTTGATAAATGGGGCCGGCTGATTGGCTCAGACCCTCCACAGCAGTAAGTGGTTGGTACTGTCGTCCCGCCCCACTGTCTCACTGCTATTTGTCAGCCGGAAGTCCTCATAGCCATCGCCACCGGAGATCACCAACTGATTGGTTTTAACGGGCAGGAGGGCGGAGGCTCGACGGCGAGCGGAATCTCGCCTCTGCAGACCCCCATTACCCCCTTCAACACCACTCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2207020 lncRNA upstream 59878 39812190 ~ 39814400 (+) False G1929758
TU2207021 lncRNA upstream 59878 39812190 ~ 39814400 (+) True G1929758
TU2207015 lncRNA upstream 94759 39779144 ~ 39779519 (+) True G1929753
TU2206985 lncRNA upstream 146317 39727631 ~ 39727961 (+) True G1929727
TU2206984 lncRNA upstream 148328 39723258 ~ 39725950 (+) True G1929726
TU2207094 lncRNA downstream 7744 39885019 ~ 39886406 (+) True G1929815
TU2207122 lncRNA downstream 44976 39922251 ~ 39922705 (+) True G1929840
TU2207129 lncRNA downstream 54458 39931733 ~ 39931937 (+) True G1929847
TU2207130 lncRNA downstream 55083 39932358 ~ 39932801 (+) True G1929848
TU2207135 lncRNA downstream 63238 39940513 ~ 39940868 (+) True G1929853
XM_021581565.2 mRNA upstream 64530 39800737 ~ 39809748 (+) False LOC110503199
XR_005039391.1 mRNA upstream 64530 39800737 ~ 39809748 (+) False LOC110503199
XM_021581566.2 mRNA upstream 64530 39803778 ~ 39809748 (+) True LOC110503199
trnat-agu-148 mRNA upstream 109546 39764659 ~ 39764732 (+) True trnat-agu-148
XR_005039426.1 mRNA upstream 241899 39630663 ~ 39632379 (+) False LOC110503201
LOC110503406 mRNA downstream 566495 40443770 ~ 40535727 (+) False LOC110503406
XM_036961742.1 mRNA downstream 932903 40810178 ~ 40837432 (+) False LOC110503211
XM_021581580.2 mRNA downstream 932903 40810178 ~ 40837501 (+) False LOC110503211
XM_036961741.1 mRNA downstream 935552 40812827 ~ 40837501 (+) True LOC110503211
XM_021581568.2 mRNA downstream 1085167 40962442 ~ 40972379 (+) False LOC110503202
TU2206900 other upstream 324498 39547812 ~ 39549780 (+) True G1929664
TU2206559 other upstream 825585 39020833 ~ 39048693 (+) True spred3
TU2206305 other upstream 941729 38931839 ~ 38932549 (+) True bicra
TU2206306 other upstream 1238886 38590181 ~ 38635392 (+) True ppp1r13l
TU2206278 other upstream 1361173 38509846 ~ 38513105 (+) True G1929196
TU2207096 other downstream 11052 39888327 ~ 39889155 (+) True G1929816
TU2207191 other downstream 148660 40025935 ~ 40028517 (+) False G1929891
TU2207202 other downstream 148660 40025935 ~ 40028517 (+) False G1929891
TU2207223 other downstream 148660 40025935 ~ 40028517 (+) False G1929891
TU2207252 other downstream 172089 40049364 ~ 40052350 (+) False G1929901

Expression Profile