RNA id: TU2211017


Basic Information

Item Value
RNA id TU2211017
length 230
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G1932894
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 41670546 ~ 41671001 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCTCTGTTTACTCTCCTCCAAATGTCCTCCCAAAtccactgtgtgtatgtatgtttgcgtgtttaaatctgtgtgtgtgttcttgtccCAGATTATAttcctgtttttgtttgtttctgtttgttgCTTCGCTATTCAGTACATCAGTTTCATCATTACATCATTACATCAGTTACATCATTACATCAGTTACATCAGTACATCAGTTACATCAGCACATTAGTACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2210990 lncRNA upstream 8717 41649422 ~ 41661829 (+) True G1932868
TU2210984 lncRNA upstream 24195 41646071 ~ 41646351 (+) True G1932862
TU2210980 lncRNA upstream 34345 41636001 ~ 41636201 (+) True G1932858
TU2210973 lncRNA upstream 38694 41631171 ~ 41631852 (+) True G1932851
TU2210941 lncRNA upstream 46100 41622586 ~ 41624446 (+) True G1932821
TU2211035 lncRNA downstream 11583 41682584 ~ 41682820 (+) True G1932910
TU2211044 lncRNA downstream 24728 41695729 ~ 41695934 (+) True G1932918
TU2211053 lncRNA downstream 32803 41703804 ~ 41704033 (+) True G1932926
TU2211066 lncRNA downstream 47572 41718573 ~ 41718934 (+) True G1932939
TU2211083 lncRNA downstream 61303 41732304 ~ 41732625 (+) True G1932952
XM_036961569.1 mRNA upstream 403267 41266767 ~ 41267279 (+) True LOC118944044
XM_036961527.1 mRNA upstream 545168 41012678 ~ 41125378 (+) False si
XM_036961525.1 mRNA upstream 545168 41029791 ~ 41125378 (+) False si
XM_036961526.1 mRNA upstream 545168 41029792 ~ 41125378 (+) True si
XM_021581569.2 mRNA upstream 698167 40962699 ~ 40972379 (+) True LOC110503202
XM_036961130.1 mRNA downstream 352481 42023482 ~ 42078730 (+) True LOC110512028
XM_036962013.1 mRNA downstream 469068 42140069 ~ 42240339 (+) False LOC110503413
XM_036962012.1 mRNA downstream 469068 42140069 ~ 42333457 (+) False LOC110503413
XM_036962011.1 mRNA downstream 469068 42140069 ~ 42335470 (+) False LOC110503413
XM_036961682.1 mRNA downstream 1052530 42723531 ~ 42785160 (+) True prdm10
TU2210655 other upstream 332358 41330050 ~ 41338188 (+) True G1932564
TU2210387 other upstream 553134 41114637 ~ 41117412 (+) True G1932319
TU2209850 other upstream 1108640 40561212 ~ 40561906 (+) True G1931869
TU2207278 other upstream 1565014 40089400 ~ 40105532 (+) False G1929916
TU2207269 other upstream 1592214 40076476 ~ 40078332 (+) True G1929909
TU2211289 other downstream 623847 42294848 ~ 42335194 (+) False LOC110503413
TU2211428 other downstream 690255 42361256 ~ 42365260 (+) True G1933231
TU2211452 other downstream 718426 42389427 ~ 42390261 (+) True G1933255
TU2211839 other downstream 824579 42495580 ~ 42500990 (+) True G1933563
TU2211865 other downstream 860717 42531718 ~ 42534983 (+) False G1933574

Expression Profile