RNA id: TU2211053


Basic Information

Item Value
RNA id TU2211053
length 230
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G1932926
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 41703804 ~ 41704033 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttcagatcaccaggtgcacggaggaaaatatttacttttgactttgacttttgacttcctatgacatcatattgcaaatggagaaaacatatgccttatgcacaagtaaaacaaaaagaaatatgataatacaagttgacaaaggtatagtttgagcaaagtaaagttagaattttgagcatgacaaattcgtgatggtacctgcccattaaaacatattgcaaatgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2211044 lncRNA upstream 7870 41695729 ~ 41695934 (+) True G1932918
TU2211035 lncRNA upstream 20984 41682584 ~ 41682820 (+) True G1932910
TU2211017 lncRNA upstream 32803 41670546 ~ 41671001 (+) True G1932894
TU2210990 lncRNA upstream 41975 41649422 ~ 41661829 (+) True G1932868
TU2210984 lncRNA upstream 57453 41646071 ~ 41646351 (+) True G1932862
TU2211066 lncRNA downstream 14540 41718573 ~ 41718934 (+) True G1932939
TU2211083 lncRNA downstream 28271 41732304 ~ 41732625 (+) True G1932952
TU2211090 lncRNA downstream 35591 41739624 ~ 41739938 (+) True G1932959
TU2211092 lncRNA downstream 37481 41741514 ~ 41741807 (+) True G1932961
TU2211094 lncRNA downstream 38064 41742097 ~ 41742353 (+) True G1932963
XM_036961569.1 mRNA upstream 436525 41266767 ~ 41267279 (+) True LOC118944044
XM_036961527.1 mRNA upstream 578426 41012678 ~ 41125378 (+) False si
XM_036961525.1 mRNA upstream 578426 41029791 ~ 41125378 (+) False si
XM_036961526.1 mRNA upstream 578426 41029792 ~ 41125378 (+) True si
XM_021581569.2 mRNA upstream 731425 40962699 ~ 40972379 (+) True LOC110503202
XM_036961130.1 mRNA downstream 319449 42023482 ~ 42078730 (+) True LOC110512028
XM_036962013.1 mRNA downstream 436036 42140069 ~ 42240339 (+) False LOC110503413
XM_036962012.1 mRNA downstream 436036 42140069 ~ 42333457 (+) False LOC110503413
XM_036962011.1 mRNA downstream 436036 42140069 ~ 42335470 (+) False LOC110503413
XM_036961682.1 mRNA downstream 1019498 42723531 ~ 42785160 (+) True prdm10
TU2210655 other upstream 365616 41330050 ~ 41338188 (+) True G1932564
TU2210387 other upstream 586392 41114637 ~ 41117412 (+) True G1932319
TU2209850 other upstream 1141898 40561212 ~ 40561906 (+) True G1931869
TU2207278 other upstream 1598272 40089400 ~ 40105532 (+) False G1929916
TU2207269 other upstream 1625472 40076476 ~ 40078332 (+) True G1929909
TU2211289 other downstream 590815 42294848 ~ 42335194 (+) False LOC110503413
TU2211428 other downstream 657223 42361256 ~ 42365260 (+) True G1933231
TU2211452 other downstream 685394 42389427 ~ 42390261 (+) True G1933255
TU2211839 other downstream 791547 42495580 ~ 42500990 (+) True G1933563
TU2211865 other downstream 827685 42531718 ~ 42534983 (+) False G1933574

Expression Profile