RNA id: TU2211445


Basic Information

Item Value
RNA id TU2211445
length 277
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1933248
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 42379127 ~ 42379403 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggacagctctgactgagaatatgtggacaactacaaatacctaggtgtctggttagactgtaaattctcattccagactcacatcaaacatctccaatccaaagttacatctagaattggattccttttcacaacaaagcaaccttcactcatgctgccaaacatacccttgtaaaactgaccatcctaccaatcctcgacttcggcgatgtcatttacaaaatagcctccaataccctactcaatacattggatgcagtctatcacagtgccatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2211439 lncRNA upstream 7401 42371448 ~ 42371726 (+) True G1933242
TU2211429 lncRNA upstream 8668 42369816 ~ 42370459 (+) True G1933232
TU2211431 lncRNA upstream 21258 42357662 ~ 42357869 (+) True G1933234
TU2211436 lncRNA upstream 24441 42354426 ~ 42354686 (+) True G1933239
TU2211434 lncRNA upstream 28493 42350418 ~ 42350634 (+) True G1933237
TU2211449 lncRNA downstream 6899 42386302 ~ 42386554 (+) True G1933252
TU2211450 lncRNA downstream 8186 42387589 ~ 42387799 (+) True G1933253
TU2211454 lncRNA downstream 15979 42395382 ~ 42395594 (+) True G1933257
TU2211458 lncRNA downstream 31930 42411333 ~ 42411534 (+) True G1933261
TU2211460 lncRNA downstream 37262 42416665 ~ 42416866 (+) True G1933263
XM_036962011.1 mRNA upstream 43657 42140069 ~ 42335470 (+) False LOC110503413
XM_036962012.1 mRNA upstream 45670 42140069 ~ 42333457 (+) False LOC110503413
XM_036962013.1 mRNA upstream 138788 42140069 ~ 42240339 (+) False LOC110503413
XM_036961130.1 mRNA upstream 300397 42023482 ~ 42078730 (+) True LOC110512028
XM_036961569.1 mRNA upstream 1111848 41266767 ~ 41267279 (+) True LOC118944044
XM_036961682.1 mRNA downstream 344128 42723531 ~ 42785160 (+) True prdm10
XM_036961315.1 mRNA downstream 686884 43066287 ~ 43212712 (+) False cdon
XM_036961316.1 mRNA downstream 686884 43066287 ~ 43212712 (+) True cdon
XM_036962148.1 mRNA downstream 920125 43299528 ~ 43420475 (+) False bcl9l
XM_036962146.1 mRNA downstream 920126 43299529 ~ 43420475 (+) False bcl9l
TU2211428 other upstream 13867 42361256 ~ 42365260 (+) True G1933231
TU2211289 other upstream 43933 42294848 ~ 42335194 (+) False LOC110503413
TU2210655 other upstream 1040939 41330050 ~ 41338188 (+) True G1932564
TU2210387 other upstream 1261715 41114637 ~ 41117412 (+) True G1932319
TU2209850 other upstream 1817221 40561212 ~ 40561906 (+) True G1931869
TU2211452 other downstream 10024 42389427 ~ 42390261 (+) True G1933255
TU2211839 other downstream 116177 42495580 ~ 42500990 (+) True G1933563
TU2211865 other downstream 152315 42531718 ~ 42534983 (+) False G1933574
TU2211866 other downstream 152315 42531718 ~ 42534983 (+) True G1933574
TU2212382 other downstream 778700 43158103 ~ 43158566 (+) True G1933999

Expression Profile