RNA id: TU2211449


Basic Information

Item Value
RNA id TU2211449
length 253
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G1933252
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 42386302 ~ 42386554 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcctacagcagcacctagatcttatgcacagattctgtcagacctgggccctgacaatacatctcagtaagaccaaaataatggtgttccaaaaaaggtccagtcaccaggaccacaaatacaaattccatctagacactgttgccctagagcacacaaaaaactatacatatcttggcctaaacatcagcgccacaggtaacttctacaaagctgtgaacgatctgagagacaaggcaagaagggcattcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2211445 lncRNA upstream 6899 42379127 ~ 42379403 (+) True G1933248
TU2211439 lncRNA upstream 14576 42371448 ~ 42371726 (+) True G1933242
TU2211429 lncRNA upstream 15843 42369816 ~ 42370459 (+) True G1933232
TU2211431 lncRNA upstream 28433 42357662 ~ 42357869 (+) True G1933234
TU2211436 lncRNA upstream 31616 42354426 ~ 42354686 (+) True G1933239
TU2211450 lncRNA downstream 1035 42387589 ~ 42387799 (+) True G1933253
TU2211454 lncRNA downstream 8828 42395382 ~ 42395594 (+) True G1933257
TU2211458 lncRNA downstream 24779 42411333 ~ 42411534 (+) True G1933261
TU2211460 lncRNA downstream 30111 42416665 ~ 42416866 (+) True G1933263
TU2211461 lncRNA downstream 38871 42425425 ~ 42425660 (+) True G1933264
XM_036962011.1 mRNA upstream 50832 42140069 ~ 42335470 (+) False LOC110503413
XM_036962012.1 mRNA upstream 52845 42140069 ~ 42333457 (+) False LOC110503413
XM_036962013.1 mRNA upstream 145963 42140069 ~ 42240339 (+) False LOC110503413
XM_036961130.1 mRNA upstream 307572 42023482 ~ 42078730 (+) True LOC110512028
XM_036961569.1 mRNA upstream 1119023 41266767 ~ 41267279 (+) True LOC118944044
XM_036961682.1 mRNA downstream 336977 42723531 ~ 42785160 (+) True prdm10
XM_036961315.1 mRNA downstream 679733 43066287 ~ 43212712 (+) False cdon
XM_036961316.1 mRNA downstream 679733 43066287 ~ 43212712 (+) True cdon
XM_036962148.1 mRNA downstream 912974 43299528 ~ 43420475 (+) False bcl9l
XM_036962146.1 mRNA downstream 912975 43299529 ~ 43420475 (+) False bcl9l
TU2211428 other upstream 21042 42361256 ~ 42365260 (+) True G1933231
TU2211289 other upstream 51108 42294848 ~ 42335194 (+) False LOC110503413
TU2210655 other upstream 1048114 41330050 ~ 41338188 (+) True G1932564
TU2210387 other upstream 1268890 41114637 ~ 41117412 (+) True G1932319
TU2209850 other upstream 1824396 40561212 ~ 40561906 (+) True G1931869
TU2211452 other downstream 2873 42389427 ~ 42390261 (+) True G1933255
TU2211839 other downstream 109026 42495580 ~ 42500990 (+) True G1933563
TU2211865 other downstream 145164 42531718 ~ 42534983 (+) False G1933574
TU2211866 other downstream 145164 42531718 ~ 42534983 (+) True G1933574
TU2212382 other downstream 771549 43158103 ~ 43158566 (+) True G1933999

Expression Profile