RNA id: TU2211458


Basic Information

Item Value
RNA id TU2211458
length 202
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1933261
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 42411333 ~ 42411534 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctgaaatgcagtggaaatgtttttgggtgattcagttcatttgcatggcaaagagggactttgcaattaattgcaattcatctgatcactcttcataacattctggagtatatgcaaattgccatcaaacaaactgaggcagcagactttgtgaaaattaatatttgtgtcattctcaaaacattcTCAAAACGGctgtac

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2211454 lncRNA upstream 15739 42395382 ~ 42395594 (+) True G1933257
TU2211450 lncRNA upstream 23534 42387589 ~ 42387799 (+) True G1933253
TU2211449 lncRNA upstream 24779 42386302 ~ 42386554 (+) True G1933252
TU2211445 lncRNA upstream 31930 42379127 ~ 42379403 (+) True G1933248
TU2211439 lncRNA upstream 39607 42371448 ~ 42371726 (+) True G1933242
TU2211460 lncRNA downstream 5131 42416665 ~ 42416866 (+) True G1933263
TU2211461 lncRNA downstream 13891 42425425 ~ 42425660 (+) True G1933264
TU2211462 lncRNA downstream 17453 42428987 ~ 42429312 (+) True G1933265
TU2211818 lncRNA downstream 38793 42450327 ~ 42450742 (+) True G1933545
TU2211820 lncRNA downstream 39993 42451527 ~ 42451889 (+) True G1933547
XM_036962011.1 mRNA upstream 75863 42140069 ~ 42335470 (+) False LOC110503413
XM_036962012.1 mRNA upstream 77876 42140069 ~ 42333457 (+) False LOC110503413
XM_036962013.1 mRNA upstream 170994 42140069 ~ 42240339 (+) False LOC110503413
XM_036961130.1 mRNA upstream 332603 42023482 ~ 42078730 (+) True LOC110512028
XM_036961569.1 mRNA upstream 1144054 41266767 ~ 41267279 (+) True LOC118944044
XM_036961682.1 mRNA downstream 311997 42723531 ~ 42785160 (+) True prdm10
XM_036961315.1 mRNA downstream 654753 43066287 ~ 43212712 (+) False cdon
XM_036961316.1 mRNA downstream 654753 43066287 ~ 43212712 (+) True cdon
XM_036962148.1 mRNA downstream 887994 43299528 ~ 43420475 (+) False bcl9l
XM_036962146.1 mRNA downstream 887995 43299529 ~ 43420475 (+) False bcl9l
TU2211452 other upstream 21072 42389427 ~ 42390261 (+) True G1933255
TU2211428 other upstream 46073 42361256 ~ 42365260 (+) True G1933231
TU2211289 other upstream 76139 42294848 ~ 42335194 (+) False LOC110503413
TU2210655 other upstream 1073145 41330050 ~ 41338188 (+) True G1932564
TU2210387 other upstream 1293921 41114637 ~ 41117412 (+) True G1932319
TU2211839 other downstream 84046 42495580 ~ 42500990 (+) True G1933563
TU2211865 other downstream 120184 42531718 ~ 42534983 (+) False G1933574
TU2211866 other downstream 120184 42531718 ~ 42534983 (+) True G1933574
TU2212382 other downstream 746569 43158103 ~ 43158566 (+) True G1933999
TU2212654 other downstream 1021914 43433448 ~ 43435352 (+) True G1934201

Expression Profile