RNA id: TU2212328


Basic Information

Item Value
RNA id TU2212328
length 354
lncRNA type sense_over
GC content 0.49
exon number 3
gene id G1933951
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 43057231 ~ 43123215 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtctctctctctgtctctctctctgtctgtctctctgtctctctctctctctatctctctctctctctctctctctctctctctctctctctctctctctctctctgtctctctgtctctctctctctttctctctctctgtctctctctctctgtctctctctctctctctctctctctgtctctctctctctctctctctgtctctctctctctctctctctctgtctctctctctctctctctctctctctctctctgtctctgtctctctctctctctgtctctctctctctgtctgtctctctctctgtctctctctctctctctctctctctctctctctctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2212319 lncRNA upstream 10932 43028800 ~ 43046299 (+) False G1933942
TU2212317 lncRNA upstream 19698 43036903 ~ 43037533 (+) True G1933941
TU2212318 lncRNA upstream 24792 43031898 ~ 43032439 (+) True G1933942
TU2212313 lncRNA upstream 52602 43004194 ~ 43004629 (+) True G1933938
TU2212310 lncRNA upstream 55359 43001623 ~ 43001872 (+) True G1933935
TU2212353 lncRNA downstream 11620 43134835 ~ 43170632 (+) False G1933973
TU2212355 lncRNA downstream 24759 43147974 ~ 43148379 (+) True G1933974
TU2212354 lncRNA downstream 47001 43170216 ~ 43170632 (+) True G1933973
TU2212396 lncRNA downstream 65826 43189041 ~ 43199824 (+) True G1934010
TU2212407 lncRNA downstream 82906 43206121 ~ 43207745 (+) True G1934017
XM_036961682.1 mRNA upstream 272071 42723531 ~ 42785160 (+) True prdm10
XM_036962011.1 mRNA upstream 721761 42140069 ~ 42335470 (+) False LOC110503413
XM_036962012.1 mRNA upstream 723774 42140069 ~ 42333457 (+) False LOC110503413
XM_036962013.1 mRNA upstream 816892 42140069 ~ 42240339 (+) False LOC110503413
XM_036961130.1 mRNA upstream 978501 42023482 ~ 42078730 (+) True LOC110512028
XM_036962148.1 mRNA downstream 176313 43299528 ~ 43420475 (+) False bcl9l
XM_036962146.1 mRNA downstream 176314 43299529 ~ 43420475 (+) False bcl9l
XM_036962147.1 mRNA downstream 176314 43299529 ~ 43420475 (+) True bcl9l
XM_036961768.1 mRNA downstream 316798 43440013 ~ 43465243 (+) False ddx6
XM_036961769.1 mRNA downstream 316820 43440035 ~ 43465243 (+) False ddx6
TU2211865 other upstream 522248 42531718 ~ 42534983 (+) False G1933574
TU2211866 other upstream 522248 42531718 ~ 42534983 (+) True G1933574
TU2211839 other upstream 556241 42495580 ~ 42500990 (+) True G1933563
TU2211452 other upstream 666970 42389427 ~ 42390261 (+) True G1933255
TU2211428 other upstream 691971 42361256 ~ 42365260 (+) True G1933231
TU2212382 other downstream 34888 43158103 ~ 43158566 (+) True G1933999
TU2212654 other downstream 310233 43433448 ~ 43435352 (+) True G1934201
TU2214548 other downstream 1977087 45100302 ~ 45103958 (+) False G1935694
TU2214547 other downstream 1978909 45102124 ~ 45103958 (+) True G1935694
TU2214550 other downstream 1980917 45104132 ~ 45104500 (+) True G1935696

Expression Profile