RNA id: TU2212396


Basic Information

Item Value
RNA id TU2212396
length 2212
lncRNA type intronic
GC content 0.39
exon number 6
gene id G1934010
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 43189041 ~ 43199824 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggtttaatatcctgacctagtgagatatacacggaggtttaatatcctgacctagtgagatatacatggaggtttaatatcctgacctagtgagatatacatggaggaggtttaataccctgacctagtgagatatacatggaggtttaataccctgacctagtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggaggtttgatatcctgacctagtgagatatacatggtggaggtttaatatcctgacctagtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggtttaataccctgacgtagtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggtttaataccctgacgtagtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggtggaggtttaatatcctgacctagtgagatatacatggaggaggtttaataccctgacctggtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggtttaatatcctgacctagtgagatatacatggaggtttaatatcctgacctagtgaggtatacatggaggaggtttaatatcctgacctagtgagatatacatggtggaggtttaatatcctgacctagtgagatatacatggaggtttaatatcctgacctagtgagatatacatggaggtttaatatcctgacctagtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggtggaggtttaatatcctgacctagtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggtttaataccctgacgtagtgagatatacatggaggtttaatatcctgacctagtgagatatacatggaggtttaatatcctgacctagtgagatatacatggaggtttaatatcctgacctagtgagatatacatggaggtttaatatcctgacctagtgagatatacatggaggtttaatatcctgacctagtgagatatacatagaggaggtttaatatcctgacctagtgaggtatacatggaggaggtttaatatcctgacctagtgagatatacatggaggtttaatatcctgacctagtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggaggtttaataccctgacgtAGTGAggtatacatggaggaggtttaatatcctgacctagtgagatatacatagaggaggtttaatatcctgacctagtgagatatacatggtggaggtTAGAAAAAATAGAtcagatcttgctaccatggaaagaaAAATACCTGTCAATTTGTGGagaaatcaccctgattaactctttagtcatatcccatttcaccctgattaactctttagtcatattccagttcaccctgattaactctttagtcatattccagttcaccctgattaactctttagtcatatcccagttcaccctgattaactctttagtcatatcccagttcactcatatcccagtttaccctgattaactctttagtcatatcccagtttaccctgattaactctttagtcatatcccagtttaccctgattaactctttagtcatatcccagtttaccctgattaactctttagtcatatcccagtttaccctgattaactctttagtcatatcccagtttaccctgattaactctttagtcatatcccagttcaccctgattaactctttagtcatatcccagtttaccttgattaactctttagtcatatcccagtttaccctgattaactctttagtcatatcccagtttaccctgattaactctttagtcatatcccagtttaccctgattaactctttagtcatatcccagttcaccctgattaactctttagtcatatcccagttcacctatttgcttatggttttgcctacaccgagcgacttgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2212353 lncRNA upstream 18409 43134835 ~ 43170632 (+) False G1933973
TU2212354 lncRNA upstream 18409 43170216 ~ 43170632 (+) True G1933973
TU2212355 lncRNA upstream 40662 43147974 ~ 43148379 (+) True G1933974
TU2212328 lncRNA upstream 65826 43057231 ~ 43123215 (+) True G1933951
TU2212343 lncRNA upstream 108753 43079219 ~ 43080288 (+) True G1933963
TU2212407 lncRNA downstream 6297 43206121 ~ 43207745 (+) True G1934017
TU2212408 lncRNA downstream 6577 43206401 ~ 43208327 (+) True G1934018
TU2212409 lncRNA downstream 8965 43208789 ~ 43209095 (+) True G1934019
TU2212422 lncRNA downstream 19932 43219756 ~ 43220300 (+) True G1934027
TU2212557 lncRNA downstream 64058 43263882 ~ 43264084 (+) True G1934136
XM_036961682.1 mRNA upstream 403881 42723531 ~ 42785160 (+) True prdm10
XM_036962011.1 mRNA upstream 853571 42140069 ~ 42335470 (+) False LOC110503413
XM_036962012.1 mRNA upstream 855584 42140069 ~ 42333457 (+) False LOC110503413
XM_036962013.1 mRNA upstream 948702 42140069 ~ 42240339 (+) False LOC110503413
XM_036961130.1 mRNA upstream 1110311 42023482 ~ 42078730 (+) True LOC110512028
XM_036962148.1 mRNA downstream 99704 43299528 ~ 43420475 (+) False bcl9l
XM_036962146.1 mRNA downstream 99705 43299529 ~ 43420475 (+) False bcl9l
XM_036962147.1 mRNA downstream 99705 43299529 ~ 43420475 (+) True bcl9l
XM_036961768.1 mRNA downstream 240189 43440013 ~ 43465243 (+) False ddx6
XM_036961769.1 mRNA downstream 240211 43440035 ~ 43465243 (+) False ddx6
TU2212382 other upstream 30475 43158103 ~ 43158566 (+) True G1933999
TU2211865 other upstream 654058 42531718 ~ 42534983 (+) False G1933574
TU2211866 other upstream 654058 42531718 ~ 42534983 (+) True G1933574
TU2211839 other upstream 688051 42495580 ~ 42500990 (+) True G1933563
TU2211452 other upstream 798780 42389427 ~ 42390261 (+) True G1933255
TU2212654 other downstream 233624 43433448 ~ 43435352 (+) True G1934201
TU2214548 other downstream 1900478 45100302 ~ 45103958 (+) False G1935694
TU2214547 other downstream 1902300 45102124 ~ 45103958 (+) True G1935694
TU2214550 other downstream 1904308 45104132 ~ 45104500 (+) True G1935696
TU2214794 other downstream 2088686 45288510 ~ 45289135 (+) True G1935897

Expression Profile