RNA id: TU2212564


Basic Information

Item Value
RNA id TU2212564
length 211
lncRNA type intronic
GC content 0.40
exon number 2
gene id G1934142
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 43305996 ~ 43306676 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgacTGGCATGGCTAATACAGGTGTAATGttaactactaactagtgttgacTGGCATGGCTAATACAGGTGTAATGttaactactaactagtgttgacTGGCATGGCTAACACAGGTGTAATGttaactactaactagtgttgacTGGCATGGCTAACACAGGTGTAATGTTAACTAATAACTAGTGTTGACTGGCATGGCTAATACAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2212557 lncRNA upstream 41912 43263882 ~ 43264084 (+) True G1934136
TU2212422 lncRNA upstream 85696 43219756 ~ 43220300 (+) True G1934027
TU2212409 lncRNA upstream 96901 43208789 ~ 43209095 (+) True G1934019
TU2212408 lncRNA upstream 97669 43206401 ~ 43208327 (+) True G1934018
TU2212407 lncRNA upstream 98251 43206121 ~ 43207745 (+) True G1934017
TU2212581 lncRNA downstream 16671 43323347 ~ 43323973 (+) True G1934152
TU2212630 lncRNA downstream 102367 43409043 ~ 43409310 (+) True G1934192
TU2212650 lncRNA downstream 111968 43418644 ~ 43468153 (+) False G1934198
TU2212656 lncRNA downstream 117104 43423780 ~ 43430519 (+) True G1934203
TU2212673 lncRNA downstream 136605 43443281 ~ 43445105 (+) True G1934210
XM_036961315.1 mRNA upstream 93284 43066287 ~ 43212712 (+) False cdon
XM_036961316.1 mRNA upstream 93284 43066287 ~ 43212712 (+) True cdon
XM_036961682.1 mRNA upstream 520836 42723531 ~ 42785160 (+) True prdm10
XM_036962011.1 mRNA upstream 970526 42140069 ~ 42335470 (+) False LOC110503413
XM_036962012.1 mRNA upstream 972539 42140069 ~ 42333457 (+) False LOC110503413
XM_036961768.1 mRNA downstream 133337 43440013 ~ 43465243 (+) False ddx6
XM_036961769.1 mRNA downstream 133359 43440035 ~ 43465243 (+) False ddx6
XM_036961770.1 mRNA downstream 133359 43440035 ~ 43465243 (+) False ddx6
XM_036961771.1 mRNA downstream 133402 43440078 ~ 43465243 (+) False ddx6
XM_036961772.1 mRNA downstream 134802 43441478 ~ 43465245 (+) True ddx6
TU2212382 other upstream 147430 43158103 ~ 43158566 (+) True G1933999
TU2211865 other upstream 771013 42531718 ~ 42534983 (+) False G1933574
TU2211866 other upstream 771013 42531718 ~ 42534983 (+) True G1933574
TU2211839 other upstream 805006 42495580 ~ 42500990 (+) True G1933563
TU2211452 other upstream 915735 42389427 ~ 42390261 (+) True G1933255
TU2212654 other downstream 126772 43433448 ~ 43435352 (+) True G1934201
TU2214548 other downstream 1793626 45100302 ~ 45103958 (+) False G1935694
TU2214547 other downstream 1795448 45102124 ~ 45103958 (+) True G1935694
TU2214550 other downstream 1797456 45104132 ~ 45104500 (+) True G1935696
TU2214794 other downstream 1981834 45288510 ~ 45289135 (+) True G1935897

Expression Profile