RNA id: TU2213661


Basic Information

Item Value
RNA id TU2213661
length 297
lncRNA type intronic
GC content 0.44
exon number 1
gene id G1935015
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 44506051 ~ 44506347 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttcattgggatgccttctacctactacagtagattgtagtgtagggttcattgggatgccttctacctactacagtagattgtagtgtagggttcattgtgatgccttctacctactacagtagattgtagtgtagggttcattgggatgccttctacctactacagtagattgtagtgtagggttcattgggatgccttctacctactacagtagattgtagtgtagggttcattgggatgccttctacctactacagtagattgtagtacagggttcattggggtgccttctac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2213658 lncRNA upstream 5191 44500493 ~ 44500860 (+) True G1935012
TU2213656 lncRNA upstream 8364 44497451 ~ 44497687 (+) True G1935010
TU2213655 lncRNA upstream 10076 44495690 ~ 44495975 (+) True G1935009
TU2213632 lncRNA upstream 41139 44464429 ~ 44464912 (+) True G1934990
TU2213607 lncRNA upstream 82210 44422200 ~ 44423841 (+) True G1934966
TU2213663 lncRNA downstream 1211 44507558 ~ 44507793 (+) True G1935017
TU2213664 lncRNA downstream 2453 44508800 ~ 44509184 (+) True G1935018
TU2213665 lncRNA downstream 3417 44509764 ~ 44510140 (+) True G1935019
TU2213671 lncRNA downstream 19342 44525689 ~ 44526195 (+) True G1935022
TU2213682 lncRNA downstream 38145 44544492 ~ 44544745 (+) True G1935031
XM_036961767.1 mRNA upstream 1014149 43472724 ~ 43491902 (+) True treh
XM_036961772.1 mRNA upstream 1040806 43441478 ~ 43465245 (+) True ddx6
XM_036961769.1 mRNA upstream 1040808 43440035 ~ 43465243 (+) False ddx6
TU2212654 other upstream 1070699 43433448 ~ 43435352 (+) True G1934201
TU2212382 other upstream 1347485 43158103 ~ 43158566 (+) True G1933999
TU2211865 other upstream 1971068 42531718 ~ 42534983 (+) False G1933574
TU2211866 other upstream 1971068 42531718 ~ 42534983 (+) True G1933574
TU2211839 other upstream 2005061 42495580 ~ 42500990 (+) True G1933563
TU2214548 other downstream 593955 45100302 ~ 45103958 (+) False G1935694
TU2214547 other downstream 595777 45102124 ~ 45103958 (+) True G1935694
TU2214550 other downstream 597785 45104132 ~ 45104500 (+) True G1935696
TU2214794 other downstream 782163 45288510 ~ 45289135 (+) True G1935897
TU2214960 other downstream 978996 45485343 ~ 45488875 (+) False G1936028

Expression Profile