RNA id: TU2213664


Basic Information

Item Value
RNA id TU2213664
length 385
lncRNA type intronic
GC content 0.44
exon number 1
gene id G1935018
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 44508800 ~ 44509184 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtagtgtagggttcattgggatgccttctacctactacagtagattgtagtgtagggttcattgggatgccttctacctactacagtagattgtagtacagggttcattggggtgccttctacctactacagtagattgtagtacagggttcattgggatgccttctacctactacagtagattgtagtgtagggttcattgggatgccttctacctactacagtagattgtagtgtagggttcattgggatgccttctacctactacagtagattgtagtacagggttcattgggatgccttctacctactacagtatattgtagtacagggttcattggggtgccttctacctactacagtagattgtagtgtagggttcatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2213663 lncRNA upstream 1007 44507558 ~ 44507793 (+) True G1935017
TU2213661 lncRNA upstream 2453 44506051 ~ 44506347 (+) True G1935015
TU2213658 lncRNA upstream 7940 44500493 ~ 44500860 (+) True G1935012
TU2213656 lncRNA upstream 11113 44497451 ~ 44497687 (+) True G1935010
TU2213655 lncRNA upstream 12825 44495690 ~ 44495975 (+) True G1935009
TU2213665 lncRNA downstream 580 44509764 ~ 44510140 (+) True G1935019
TU2213671 lncRNA downstream 16505 44525689 ~ 44526195 (+) True G1935022
TU2213682 lncRNA downstream 35308 44544492 ~ 44544745 (+) True G1935031
TU2213714 lncRNA downstream 68294 44577478 ~ 44586078 (+) False G1935051
TU2213715 lncRNA downstream 74951 44584135 ~ 44585068 (+) False G1935051
XM_036961767.1 mRNA upstream 1016898 43472724 ~ 43491902 (+) True treh
XM_036961772.1 mRNA upstream 1043555 43441478 ~ 43465245 (+) True ddx6
XM_036961769.1 mRNA upstream 1043557 43440035 ~ 43465243 (+) False ddx6
TU2212654 other upstream 1073448 43433448 ~ 43435352 (+) True G1934201
TU2212382 other upstream 1350234 43158103 ~ 43158566 (+) True G1933999
TU2211865 other upstream 1973817 42531718 ~ 42534983 (+) False G1933574
TU2211866 other upstream 1973817 42531718 ~ 42534983 (+) True G1933574
TU2211839 other upstream 2007810 42495580 ~ 42500990 (+) True G1933563
TU2214548 other downstream 591118 45100302 ~ 45103958 (+) False G1935694
TU2214547 other downstream 592940 45102124 ~ 45103958 (+) True G1935694
TU2214550 other downstream 594948 45104132 ~ 45104500 (+) True G1935696
TU2214794 other downstream 779326 45288510 ~ 45289135 (+) True G1935897
TU2214960 other downstream 976159 45485343 ~ 45488875 (+) False G1936028

Expression Profile