RNA id: TU2214556


Basic Information

Item Value
RNA id TU2214556
length 276
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1935702
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 45107028 ~ 45107303 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtcattccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtatatgatcaCACCCAGGGAATGTGATCAATATTTACTGCAATAAACATATTAGGGTTGCCcctcagaggtggaaactttccatggaaattaacgggaatatatgggaattaatatgAATACCGTTTAAAtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2214542 lncRNA upstream 13305 45093520 ~ 45093723 (+) True G1935690
TU2214522 lncRNA upstream 31475 45074625 ~ 45075553 (+) True G1935675
TU2213988 lncRNA upstream 52787 45052052 ~ 45054241 (+) True G1935264
TU2213991 lncRNA upstream 57564 45046126 ~ 45049464 (+) True G1935266
TU2213985 lncRNA upstream 64196 45042484 ~ 45042832 (+) True G1935261
TU2214568 lncRNA downstream 14902 45122205 ~ 45123044 (+) True G1935711
TU2214588 lncRNA downstream 33027 45140330 ~ 45144399 (+) True G1935723
TU2214624 lncRNA downstream 88758 45196061 ~ 45196524 (+) True G1935750
TU2214676 lncRNA downstream 91145 45198448 ~ 45199982 (+) True G1935795
TU2214682 lncRNA downstream 99492 45206795 ~ 45207249 (+) True G1935801
XM_036961767.1 mRNA upstream 1615126 43472724 ~ 43491902 (+) True treh
XM_036961772.1 mRNA upstream 1641783 43441478 ~ 43465245 (+) True ddx6
XM_036961769.1 mRNA upstream 1641785 43440035 ~ 43465243 (+) False ddx6
TU2214550 other upstream 2528 45104132 ~ 45104500 (+) True G1935696
TU2214548 other upstream 3070 45100302 ~ 45103958 (+) False G1935694
TU2214547 other upstream 3070 45102124 ~ 45103958 (+) True G1935694
TU2212654 other upstream 1671676 43433448 ~ 43435352 (+) True G1934201
TU2212382 other upstream 1948462 43158103 ~ 43158566 (+) True G1933999
TU2214794 other downstream 181207 45288510 ~ 45289135 (+) True G1935897
TU2214960 other downstream 378040 45485343 ~ 45488875 (+) False G1936028
TU2214961 other downstream 378040 45485343 ~ 45487447 (+) False G1936028
TU2214964 other downstream 378433 45485736 ~ 45487871 (+) True G1936029
TU2215206 other downstream 658547 45765850 ~ 45767859 (+) True G1936247

Expression Profile