RNA id: TU2214771


Basic Information

Item Value
RNA id TU2214771
length 397
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id G1935875
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 45271277 ~ 45272793 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGTATGAGTACAACCAGGGCAGTATGTTATTACCAGGTATTAATACAACCAGGGCAGTATGTTATTACCAGgtatgaatacaaccagggcagtatgttattaccagGTATGAATACAACCAGGGCAGTATGTTAATACCAGGTATGAATACAACCAGGGCAGTATGTTATTTCCAGGTATGAGTACAACCAGGGCAGTATGTTATTACCAGGTATGAATACAACCAGGGCAGTATGTTATTACCAGGTATGAATACAACCAGGGCAGTATGTTATTACCAGGTATGAATACAACCAGGGCAGTATGTTATTACCAGGTATGAATACAACCAgggcagtatgttaatatcaggtATGAATACAACCAGGGCAGTATGTTATTACCAGGTATGAATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2214741 lncRNA upstream 16918 45253834 ~ 45254359 (+) True G1935858
TU2214735 lncRNA upstream 22705 45248345 ~ 45248572 (+) True G1935852
TU2214684 lncRNA upstream 59820 45211157 ~ 45211457 (+) True G1935803
TU2214682 lncRNA upstream 64028 45206795 ~ 45207249 (+) True G1935801
TU2214676 lncRNA upstream 71295 45198448 ~ 45199982 (+) True G1935795
TU2214786 lncRNA downstream 9980 45282773 ~ 45283005 (+) True G1935889
TU2214790 lncRNA downstream 12567 45285360 ~ 45285581 (+) True G1935893
TU2214793 lncRNA downstream 14800 45287593 ~ 45287924 (+) True G1935896
TU2214796 lncRNA downstream 23817 45296610 ~ 45298983 (+) False G1935899
TU2214797 lncRNA downstream 23817 45296610 ~ 45298983 (+) True G1935899
XM_036961767.1 mRNA upstream 1779375 43472724 ~ 43491902 (+) True treh
XM_036961772.1 mRNA upstream 1806032 43441478 ~ 43465245 (+) True ddx6
XM_036961769.1 mRNA upstream 1806034 43440035 ~ 43465243 (+) False ddx6
TU2214550 other upstream 166777 45104132 ~ 45104500 (+) True G1935696
TU2214548 other upstream 167319 45100302 ~ 45103958 (+) False G1935694
TU2214547 other upstream 167319 45102124 ~ 45103958 (+) True G1935694
TU2212654 other upstream 1835925 43433448 ~ 43435352 (+) True G1934201
TU2212382 other upstream 2112711 43158103 ~ 43158566 (+) True G1933999
TU2214794 other downstream 15717 45288510 ~ 45289135 (+) True G1935897
TU2214960 other downstream 212550 45485343 ~ 45488875 (+) False G1936028
TU2214961 other downstream 212550 45485343 ~ 45487447 (+) False G1936028
TU2214964 other downstream 212943 45485736 ~ 45487871 (+) True G1936029
TU2215206 other downstream 493057 45765850 ~ 45767859 (+) True G1936247

Expression Profile