RNA id: TU2215024


Basic Information

Item Value
RNA id TU2215024
length 603
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G1936086
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 45513941 ~ 45514543 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atagcttggatccccattggttcctgccaaggcagcagctactcttattGGGATCTGGCTAAATTAATCAAATGTAAatcacattacaatacattctttacagaattcacaacacactaagtgtgtgccctcaggcccctactccactaccacatatctacaacacactaagtgtgtgccctcaggcccctactccactaccacatatctacaacacactaagtgtgtgccctcaggcccctactccactaccacatatctacaacacactaagtgtgtgccctcaggcccctactccactaccacatatctacaacacactaagtgtgtgccctcaggcccctactccactaccacatatctacaacacactaagtgtgtgccctcaggcccctactccactaccacatatctacaacgcaAAATCggtgttatcgtgtgtgtgtctgtgcctatgtttgtgttgtttcacagtccccgcttttccataaggtgtatttttacctgctttttaaatcaaattctactgcttgcatcagttacctgatgtggaatagagttccatgtagtcatggatctatgtagtactgtgcgcctcccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2215011 lncRNA upstream 10934 45502775 ~ 45503007 (+) True G1936075
TU2214958 lncRNA upstream 20942 45485343 ~ 45492999 (+) False G1936028
TU2214962 lncRNA upstream 20942 45491081 ~ 45492999 (+) True G1936028
TU2214933 lncRNA upstream 70626 45439797 ~ 45443315 (+) True G1936005
TU2214899 lncRNA upstream 113289 45400245 ~ 45400652 (+) True G1935979
TU2215027 lncRNA downstream 2132 45516675 ~ 45516911 (+) True G1936089
TU2215028 lncRNA downstream 2470 45517013 ~ 45517221 (+) True G1936090
TU2215036 lncRNA downstream 8121 45522664 ~ 45522954 (+) True G1936098
TU2215073 lncRNA downstream 35260 45549803 ~ 45550059 (+) True G1936127
TU2215081 lncRNA downstream 42712 45557255 ~ 45557564 (+) True G1936135
XM_036961767.1 mRNA upstream 2022039 43472724 ~ 43491902 (+) True treh
XM_036961772.1 mRNA upstream 2048696 43441478 ~ 43465245 (+) True ddx6
XM_036961769.1 mRNA upstream 2048698 43440035 ~ 43465243 (+) False ddx6
TU2214960 other upstream 25066 45485343 ~ 45488875 (+) False G1936028
TU2214964 other upstream 26070 45485736 ~ 45487871 (+) True G1936029
TU2214961 other upstream 26494 45485343 ~ 45487447 (+) False G1936028
TU2214794 other upstream 224806 45288510 ~ 45289135 (+) True G1935897
TU2214550 other upstream 409441 45104132 ~ 45104500 (+) True G1935696
TU2215206 other downstream 251307 45765850 ~ 45767859 (+) True G1936247
TU2215260 other downstream 330161 45844704 ~ 45846538 (+) True G1936286

Expression Profile