RNA id: TU2215036


Basic Information

Item Value
RNA id TU2215036
length 291
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1936098
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 45522664 ~ 45522954 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggccagacagattaccaggacgtgtactcagagcatgcgctgaccaactggcaagtgtcttcactgacattttcaaactctccctgtctgagtctgtaataccaacatgtttcaagcagaccaccatagtccctgtgcccaagaacactaaaataacctgcctaaatgactaccgacccgtagcactcacatctgtagccatgaagtgctttgaaaggctggttatggctcacatcaataccatcatcccgaaaatcctagacccactccaattcaaataccatcccaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2215028 lncRNA upstream 5443 45517013 ~ 45517221 (+) True G1936090
TU2215027 lncRNA upstream 5753 45516675 ~ 45516911 (+) True G1936089
TU2215024 lncRNA upstream 8121 45513941 ~ 45514543 (+) True G1936086
TU2215011 lncRNA upstream 19657 45502775 ~ 45503007 (+) True G1936075
TU2214958 lncRNA upstream 29665 45485343 ~ 45492999 (+) False G1936028
TU2215073 lncRNA downstream 26849 45549803 ~ 45550059 (+) True G1936127
TU2215081 lncRNA downstream 34301 45557255 ~ 45557564 (+) True G1936135
TU2215091 lncRNA downstream 46418 45569372 ~ 45584931 (+) True G1936145
TU2215106 lncRNA downstream 70964 45593918 ~ 45594415 (+) True G1936160
TU2215107 lncRNA downstream 71716 45594670 ~ 45595093 (+) True G1936161
XM_036961767.1 mRNA upstream 2030762 43472724 ~ 43491902 (+) True treh
XM_036961772.1 mRNA upstream 2057419 43441478 ~ 43465245 (+) True ddx6
XM_036961769.1 mRNA upstream 2057421 43440035 ~ 43465243 (+) False ddx6
TU2214960 other upstream 33789 45485343 ~ 45488875 (+) False G1936028
TU2214964 other upstream 34793 45485736 ~ 45487871 (+) True G1936029
TU2214961 other upstream 35217 45485343 ~ 45487447 (+) False G1936028
TU2214794 other upstream 233529 45288510 ~ 45289135 (+) True G1935897
TU2214550 other upstream 418164 45104132 ~ 45104500 (+) True G1935696
TU2215206 other downstream 242896 45765850 ~ 45767859 (+) True G1936247
TU2215260 other downstream 321750 45844704 ~ 45846538 (+) True G1936286

Expression Profile