RNA id: TU2290186


Basic Information

Item Value
RNA id TU2290186
length 607
RNA type TUCP
GC content 0.60
exon number 1
gene id LOC110506276
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 14613586 ~ 14678505 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCTCTCTTCATCGATACCAAACTCCGCTCCAACACCGAGGCAAGCTTCGCTACCTCCACGACAACTCTGGGGCGAGGCAGAGTGGTAGGGCTGAGGAGACAGATGACGGAGCAGAAGTACGAGtcggatggagtgagggaggagaggcagcagGCGGAGCAGGATGGGAAGAGCATACAGATCGACGTTGTGGACACGTCACAACCGCAGAAAGCTGCCGGGCTGCTGATGGTGCACACCAAAAACAGCCCagaggaggaagacagggggCAGGAGAATACACCAGCCCAGGACAACAGCATCCCCAGTGAACTGAGAGACCCCAACCAGCCAAAACCCCCCACCAACAGCCACAGTTCCATGCCCCTGCCCCCTGTGCCACGGGGGAAGAGCATCACGGCTGGGGGGTCGGTGGACGAGCCAATCAAGCTGCCCTTCCGCATGCCCCCTCCCCCACTGGCCTCAGTGGACATCGAGGAGGTGGAGGAGTTTGTCTTCTCCGAGCCCTTGCCGCCACCGTTGGAATTCGCCAACAGCATCGACATCCCTGAGGACCAGGCAACGGCCATCGCTGAGTTGCTCAAGCAACGAGACCAAGAGAGACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2290194 lncRNA downstream 3536 14629200 ~ 14629466 (-) True G2001473
TU2290177 lncRNA downstream 11128 14606888 ~ 14621874 (-) True G2001456
TU2290184 lncRNA downstream 16316 14613588 ~ 14616686 (-) False LOC110506276
TU2290165 lncRNA downstream 45149 14586587 ~ 14587853 (-) True G2001449
TU2290130 lncRNA downstream 91872 14540907 ~ 14541130 (-) True G2001416
TU2290203 lncRNA upstream 14827 14648435 ~ 14648692 (-) True G2001482
TU2290210 lncRNA upstream 29597 14663205 ~ 14674139 (-) True G2001489
TU2290233 lncRNA upstream 66276 14699884 ~ 14700123 (-) True G2001511
TU2290236 lncRNA upstream 69818 14703426 ~ 14703642 (-) True LOC110506082
TU2290241 lncRNA upstream 76103 14709711 ~ 14710005 (-) True G2001519
LOC110506081 mRNA downstream 136450 14377418 ~ 14496552 (-) True LOC110506081
XM_036964285.1 mRNA downstream 264129 14320207 ~ 14368873 (-) False LOC110506271
XM_036964282.1 mRNA downstream 264130 14318304 ~ 14368872 (-) False LOC110506271
XM_036964283.1 mRNA downstream 265042 14318304 ~ 14367960 (-) False LOC110506271
XM_036964284.1 mRNA downstream 265042 14318304 ~ 14367960 (-) False LOC110506271
XM_036964122.1 mRNA upstream 69500 14703108 ~ 14788733 (-) False LOC110506082
XR_005039896.1 mRNA upstream 260887 14894495 ~ 14898121 (-) False LOC110506277
XR_005039894.1 mRNA upstream 260887 14894495 ~ 14898577 (-) False LOC110506277
XR_005039895.1 mRNA upstream 260887 14894495 ~ 14898577 (-) False LOC110506277
LOC110506083 mRNA upstream 452580 15086188 ~ 15095528 (-) True LOC110506083
TU2289555 other downstream 354256 14278141 ~ 14278746 (-) True G2000879
TU2288713 other downstream 1002927 13629784 ~ 13630075 (-) True G2000052
TU2288641 other downstream 1111482 13520686 ~ 13521520 (-) True G1999980
TU2288512 other downstream 1294851 13337335 ~ 13338151 (-) True G1999856
TU2285507 other downstream 3214667 11418099 ~ 11418335 (-) True G1996949
TU2292087 other upstream 1081940 15715548 ~ 15718308 (-) True G2003219
TU2292183 other upstream 1322019 15955627 ~ 15959565 (-) False nav2a
TU2292186 other upstream 1322019 15955627 ~ 15959530 (-) True nav2a
TU2292784 other upstream 2087383 16720991 ~ 16723682 (-) True G2003819
TU2294243 other upstream 3253837 17887445 ~ 17890081 (-) False G2005166

Expression Profile