RNA id: XM_021587173.2


Basic Information

Item Value
RNA id XM_021587173.2
length 3448
RNA type mRNA
GC content 0.52
exon number 19
gene id LOC110507290
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 218315 ~ 305904 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctctcttttcttctcaaCCCCCAGCTCATGCTGTTTGTCTGCTTTCTCTTACTCTGTAACTCGCCCTCTTTCACTCCCACTGCCTTCCTTTCACCCTCCCTCGCTCTTCAATTGCTTTGTGCTCAGTGTTTATAGTCCTTCACTAACTCtgcatagagggagagagtgagagacaaggaagaaagaaagaaagaaagaaagacagggagggaaggagacagaaagAAGAAGTGTAAGGACAAACTCTTGAAAACTTTATTAAAGATGTCCAGCTACAAGCGTGCAACATTTGAGGAGGAGGCGACAGACAACCCAGCTGATGGGAGCATGTCTCCGGACAGTGTGGAGGTTGGCTTTCGGAAGGGCGGCATCCAGCTCCTCGGTCCCATGGGCAGGAGGACTCAAATGGAGGTAGTGCTGGCTGGTgtgctgctctgctctctcctcgCCCTGTTCGGATGTGCTGTCACGCTGGGCATGCGCTACAACACAGACCCAGCGCGAAGCCTGTGTCTGACTGAGGCCTGTATTACGGTGGCCAGTAAGATCGTAGAGGCCCTGGACCGCAGCGCTGACCCCTGCCATGACTTCTACCAGTACGCCTGCGGGGGCTGGGTACGCAAGAACCCCCTCCCTGATGGACGCTCTCGCTGGAGCACCTTCAACAGCATCTGGGACCAGAACCAGGCTCTCCTCAAACACCTGCTGGAGAATGGCACATTCAACTCCAGCAGCGACGCCGAGAAGAAGACCCAGTTCTACTACCTGTCCTGCCTCAACGAGCAGCACATCGAGGAGCTGGGAGCCATGCCTCTCATTGACCTCATTGCAAAGACAGGGGGCTGGAACATAACGGGGCCCTGGGAGAAGGACAACTTTATGGAGGTGCTGAAGACAGTGTCGGGCCCCTACCGTGCCCAGCCCTTCTTCACCATCGGAGTCAGCGTGGACCCCAAGAACTCCAACAGTAACGTCATCCAGGTGGACCAATCAGGGCTGTTCCTCCCCTCGCGGGACTATTACCTCAACAAGACAGCCAATGAAAAGGTGTTGAAGGCGTATCTGGACTACATGGTGGAGCTGAGCCTGCTGTTGGGGGGGGATAAGAACTCCACACAAAGCCAGATGCAGCAGATCCTGGACTTTGAAACAGCGCTCGCCAACATCACAGTACCGCAGGACGAACGTCGAGATGAGGAGAAGATCTACCACAAGATCACCATCGCcgagctgcagCTGCTGGCTCCAGCGGTGGACTGGCTGGACTACCTGTCCTCGGCCCTGTCCCCTCTGGACCTGAACGATACAGAGCCAGTGGTGCTATATGCCAAGGAGTACTTGCAACAGGTGTCTGACCTGATCAACAAGACCGAGCGCAGCCTGCTCAACAACTACATGATCTGGAACCTGGTGCAGAAGGGTGCGTCCAGTCTGGACCAGCGCTTTGAGAACGCCCAGGACAAGCTGCTAGAGAGCCTGTATGGAACCAAGAAGTCCTGCACACCTCGATGGCAGACCTGCATTGGGAACACAGATGACACGCTCGGCTTTGCCCTGGGTGCACTCTTTGTCAAAGCAACATTTGATAAACACAGCAAAGAGATTGCAGAGGGTATGATCAATGAGATCCGTACTGCCTTCAAATATGCTCTTGATCACCTCAAGTGGATGGACAAACAAACGCGTCAGGCAGCCAAGGACAAGGCGGACGCCATCTATGACATGATTGGATTTCCTGACTTCATCCTGGACCCTAAAGAACTGGATGATGTTTATGATGGGtatgATGTCTCAGAAGACAACTTCTTCCAGAACGCACTCAACTTCTACAACTTCTCCGCCAGGGTGATGGCCGATCAGCTCCGCAAGCCGCCCAACAGAGACCAATGGAGTATGACCCCTCCCACAGTCAATGCCTATTACATGCCCACCAAGAATGGCATTGTCTTTCCAGCTGGAATCCTCCAGGCACCCTTTTATGCCCAGGATCACCCcaaAGCACTGAACTTCGGGGGGATCGGAGTAGTGATGGGACACGAGCTCACTCATGCCTTTGATGACCAGGGCAGGGAATACGACAAAGACGGGAACCTTCGGCCCTGGTGGCAAAATTCCTCTGTGGAATCATTTAAAAACCGCACAGAATGCATGGTGGAGCAGTACAATGGGTTTACCATCAATGGGGAGCATATAAATGGCAAGCAGACGCTGGGAGAGAACATTGCTGACAACGGAGGCCTAAAGGCAGCCTATAATGCGTACCAGGCATGGGTGCAGGAGAACGGTGAGGAGAAGAGGCTGCCAGCGGTCAACCTGACCAATGACCAACTATTCTTTGTGGGATTTGCACAGGTGTGGTGTTCCGTGCGAACCCCTGAGAGTGCCCACGAAGGACTCATGACGGACCCCCACAGCCCCCCAAAATACCGCGTCATCGGCACCCTCTCCAACTCGCCAGACTTTGCTGAGCACTTCCAGTGCCCCAGTGGCTCCCCTATGAACTCAGGTCACCGCTGTGTGGTGTGGTAGGGCCTGTGAGAACCAGTGGGGGTGCTGTCTGTGGAAGCTAAATGGAGAaacaagaggaggagaagaacctCTAACTAATcatcagattttttttcttctaattctCTTTTGTTTGTACATGATACTGGATCACTAGTGGTTTGTGGGTAGAGCAGGACCAACTCCAGGTGAGGGAGAGAAATGTTGTCATcagctgatgtgtgtgtgtgtgtgtatttccagTGTTATGGTATTTTTCCTCTTTATCCACCCCTGCCCCCCACTCACCGGTGGGGCACAAAGGCacattttatttattgttttcTAGACTTGGTAGGGGGCCGGGGAGGAGGAGCCACTAGGGGCTGTCTATCCCCTCACCTTTCTCTATGCTTCTGTGTCGTCACTGTCCTTGCTGTATGCCCTGTTCACAATTTAAACCAGAGCCCTCTTCACTTAGGGCTCTCACTGAAGGCACTATGACATCACACGATGGGTTCAGCTGCCTTTGTGACCTTGCAGGAAGCGCAGAAACTTGGCTGTGACATCACAGGATGGTTCATCTGCCTCTGACCTCACAGGAAGTACATAAACTTCACAATGATTGAACATTGTATATGGCTTCATCTCAAATGCCATCCCTATTCTCTATATTACTTACTTGCCTTGGCACATCCACAAGAGAGCACCACTGCTTCTGGTCTGCATGTCCTATATAGTATACATATAGTACAATGTGGCTCCGGTAAATAGTTCTGCCCTATGAGGTGTCATTtgtatagggtgtcatttgagatggATCCATTAAGActcagctctctttctctgttgctTCACAGGAAGTGCACTGGCGTATGTGGGTCCTCAAAGATACCACTCAGCACCCTCTGTGACATCACAATGAATTCACAGAAGGTGCTTCACTGTGACCTCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2332476 lncRNA downstream 7004 210587 ~ 211311 (-) True G2038809
TU2332475 lncRNA downstream 7738 210106 ~ 210577 (-) True G2038808
TU2332454 lncRNA downstream 16199 167388 ~ 202116 (-) False G2038798
TU2332457 lncRNA downstream 16199 167388 ~ 202116 (-) False G2038798
TU2332450 lncRNA downstream 28082 182055 ~ 190233 (-) False G2038798
TU2332578 lncRNA upstream 123945 423047 ~ 426644 (-) True G2038909
TU2332733 lncRNA upstream 312716 611818 ~ 612167 (-) True G2039032
TU2333194 lncRNA upstream 478674 777776 ~ 777993 (-) True G2039458
TU2333196 lncRNA upstream 515365 814467 ~ 816586 (-) True defb4
TU2333259 lncRNA upstream 549850 848952 ~ 851621 (-) False G2039501
XM_036964863.1 mRNA upstream 156950 456052 ~ 470550 (-) False LOC110507294
XM_036964859.1 mRNA upstream 156952 456054 ~ 470305 (-) False LOC110507294
XM_036964856.1 mRNA upstream 156952 456054 ~ 470550 (-) False LOC110507294
XM_036964857.1 mRNA upstream 156952 456054 ~ 470550 (-) False LOC110507294
XM_036964858.1 mRNA upstream 156952 456054 ~ 470573 (-) False LOC110507294
TU2333132 other upstream 470872 769974 ~ 770737 (-) True LOC110507298
TU2335902 other upstream 2596474 2895576 ~ 2896391 (-) True G2041883
TU2335904 other upstream 2599885 2898987 ~ 2899388 (-) True G2041885
TU2336713 other upstream 3101477 3400579 ~ 3402997 (-) True G2042608
TU2336663 other upstream 3240082 3539184 ~ 3541753 (-) True LOC110507356

Expression Profile