RNA id: XM_021587179.2


Basic Information

Item Value
RNA id XM_021587179.2
length 2200
RNA type mRNA
GC content 0.52
exon number 7
gene id LOC110507294
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 456052 ~ 470573 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACACGCATCAGCAACTCTCTGGGGCGATAGAAACTGGCCGGGGGAGTGTCACTGGCTAGAAGCACTTTCTTCCTGTTTCACTCCAACTAGCTAACTTCGATTTATTCCTTGTCATTTTGTGAGTGTCGGAGAACATTAGCTCCACAAAAGCCATCCTTAGCTCGCGAGCTACTTGCCAGCTGCTGCTAGCACGCGTTTCACGACCCCGGGCTTCGTGTCGAGGTGTGGAGCATGTGGACGTCCTGCTGTAACTGGTTCTGTCTGGACACTGCCACGGTGGAGGAGAGCAACAGCAGCATGCGTCACCAGGCCTATACTAACTCAGGTTACAGCAGCTACCCATCGCCCCCACTCCCGGAACACACATGCAAAGCCTGCGGAAGCCACTTCGTCACCCTTGCCAGAAAGCATGTCTGCGTGGACTGCAAGAAGAACTACTGCGGCAGTTGTTCGGCCCAGCTTGAGCCCCGGCAACGCCTTTGCCACACTTGCCAGCGGTTTCACGGCACGCTTTTCGAGCGCACCGAGCTGATGAAGCTCAAGGTGAAGGACCTGCGCGACTACCTCCACCTGCACGAGGTCTCAACACAGATGTGCCGTGAGAAAGAGGAACTGGTGGAGCTGGTCCTGGGACAGCAGACACCATCATCCTCTGGCCCAATCATAAACCCTCTGACCCAAACACAGACCCCCACCGTGACCCAGCATGAGACAACTCCTCTTCCAGcccccactactaccaccaccaccacaccttccACAAACCCCGACCCCACCTCCACAGACAATGTCCCTTCACAGCCGCCACCCACTCAGGAGGGCAGTCAGACACCGTCTGTGTTGTTGCCCTTGGGTCCTGAGGAGCCACTGGACACTGAGGGAGATACAGAGCTGCAGGGAGAGCAGGAGCTGCAGTCCTCAGACACAGATGAGGTGCTGGCACCAGGCCGCAGGGCGTCGCTGTCAGACCTGGCCACTGCAGACGACATCGAGGCCCTCAGCGTCCGGCAGCTCAAGGAGATCCTAGCCCGTAACTTTGTCAACTACAAGGGCTGCTGCGAGAAGTGGGAGCTAATGGAGAGGGTCACCCGCCTCTACCATGACCAGAAGGACCTCCAGAATCTGGTTTCAAGTACAAATGACGGCACAGACCCCAGTGGTACCCCTGGCCAGGAAGAGAACCTGTGTAAGATCTGCATGGACTCTCCTATTGACTGTGTCCTGCTGGAGTGCGGCCACATGGTCACCTGCACCAAGTGTGGCAAGAGGATGAACGAGTGCCCCATCTGCAGGCAGTATGTGGTGCGCGCCGTTCACATCTTTAGAGCCTGAGACCTACTAAGCCTtgggaatcccccccccccccccccccccctcttccccccccgACTTGATACATGTGGCCTTACCACCcatagggcggcagggtagcctagtggttagagcgttggactagtaaccggaaggttgcaaacccctgagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagttaacccactcattgaaaataagaatttgttcttaactgacttgcctagttaaattaaaataaaaattatataaaaaaaaataggctagaccaggggtattcaactcttaccatATGAGTTCCGGAGGCtgttggttttctgttctacctgatacaTATTTGCATCTACCTGGTGTCCAAGGTGTAAATCAGTCtgtgattagaggggaacaatggaaTGAAAGCattggaactggctttgaggtccaaagttgagtttgaggggactaacctcctctccctccagttCTCCACTGATGGTCCTAGAGACCCAGAGTACTGGTTCCCCCTGCTGGAGGGATGACCAGGGGAGGTTATACCTTCAAGAAACCACACAAACCCAATGACTGGACATGGGCACTTCCTCCTTTTATTGACTGGACTCCTACAGCTCATATCTTAAAGCTGATGAGGATATTATGTCATATTATTAGAATAAGAGTGCCTAATAACATATATGTATTTTTCCTTTGGAGACCTACTACTAGTAAATACAGTAAGGGGTCATATATGACCccttactgtatatgtatgtatatatgtatatgtatgtatgtaatgtatgtatgtatgaaggaagtgtgtgtgtgtgtgtgtgtgtatgtatatacatacatacacacacacacacacac

Function

GO: NA

KEGG:

id description
K20804 RNF34; E3 ubiquitin-protein ligase RNF34

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2332578 lncRNA downstream 29417 423047 ~ 426644 (-) True G2038909
TU2332476 lncRNA downstream 244750 210587 ~ 211311 (-) True G2038809
TU2332475 lncRNA downstream 245484 210106 ~ 210577 (-) True G2038808
TU2332459 lncRNA downstream 265828 183037 ~ 190233 (-) False G2038798
TU2332733 lncRNA upstream 141268 611818 ~ 612167 (-) True G2039032
TU2333194 lncRNA upstream 307226 777776 ~ 777993 (-) True G2039458
TU2333196 lncRNA upstream 343917 814467 ~ 816586 (-) True defb4
TU2333259 lncRNA upstream 378402 848952 ~ 851621 (-) False G2039501
TU2333271 lncRNA upstream 380621 851171 ~ 861381 (-) False G2039501
XM_021587172.2 mRNA downstream 150157 218315 ~ 305904 (-) True LOC110507290
XM_021587173.2 mRNA downstream 156959 218315 ~ 299102 (-) False LOC110507290
XM_036964753.1 mRNA upstream 16672 487222 ~ 495580 (-) False LOC110507295
XM_021587182.2 mRNA upstream 16672 487222 ~ 495835 (-) False LOC110507295
XM_021587183.2 mRNA upstream 16672 487222 ~ 495835 (-) False LOC110507295
XM_021587185.2 mRNA upstream 16672 487222 ~ 495835 (-) False LOC110507295
XM_021587184.2 mRNA upstream 16672 487222 ~ 495836 (-) False LOC110507295
TU2333132 other upstream 299424 769974 ~ 770737 (-) True LOC110507298
TU2335902 other upstream 2425026 2895576 ~ 2896391 (-) True G2041883
TU2335904 other upstream 2428437 2898987 ~ 2899388 (-) True G2041885
TU2336713 other upstream 2930029 3400579 ~ 3402997 (-) True G2042608
TU2336663 other upstream 3068634 3539184 ~ 3541753 (-) True LOC110507356

Expression Profile