RNA id: XM_036964753.1


Basic Information

Item Value
RNA id XM_036964753.1
length 2620
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC110507295
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 487222 ~ 495836 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCCTCTGAAAGATAGGCCTGGGTTCAGAACACGGGCCAGACAGTGCCAGTGGCTAGCCTCTCACCGCTGCTTTGATGAATGGGAAGCCGGTATTGAGGGCGGGGAAAACTCGTGGATTGACCATAGTTAGCTACTTCCAGATAGGTGGCAGTGGACCTGGTGGACCCCGCAAGCAGAAGGATCTACCCACAGAGCCCCCATACACAGCCTACGTGGGCAACCTGCCCTTCAACACAGTACAAGGAGACATAGACGCCATTTTCAAAGACCTCAATGTCAGGAGTGTTCGACTAGTCCGAGACAAAGAAACAGACAAGTTTAAAGGTTTTTGTTATGTAGAGTTTGATGACTTGGAATCCCTTAAAGAAGCTTTGACGTATGATGGTGCTCTCCTTGGAGATCGGTCACTCAGGGTTGACATAGCAGAGGGCCGAAAGCAAGAGAGGGGTGCCGGAGGATTCGGCTTCCGGGGGAACGACAGGGGAGGCCGAGGGGGCTCTCGTGGAGGTGGTCCCAGAGGAGGTTCCAGAGACGACTATGAAGGAGGCTACAGAGGAGATGACGACTTCGGACGAGGCCGAGGAGGTGGCCGCGGTGGTGACCGAAGGGGGGGCGGTGGAGGAGCAGGCATGGGGGGACGCTACAGGGACGGCGGCCCACCACCGCGTGCTGGAGCGGATGACTTCAGAGAACCCTCTGACGAGGAGAGGGCACAGAGACCACGGCTTCAGCTGAAGCCACGCACGGTGGCTGCTCCGCTAAACCAAGTTGCCAACCCCAACTCTGCCATATTTGGCGGAGCCAAGCCGAGAGAGGAGCTTGAAAAAGAGGCAGATAAGGAATAGATATATCCACGTGGCTGCATTATTCTGGAAGTCTACTCTGGATCTACTGGCTTTGTTTACCAAAAATCTTTCAAAGACTTCTCCCAAAGAGCTCGCTGGGGAGTCAGGCGCTGGGTTCCTCTTTCTGCTTGCTAACACAAAGCAGGCCTTCATCTAATTGGTAAAAAAAGCAGTTGGACCCAAGGCTGCTGTGAGGGGCAGGGGCCAGGCCTATGTCAACCTGACCCGTACCCCACACACATCAAAAGGAACTCGGGACAGGGGCTTCAGTTTGGTTCTGTTGCCTTTGGGTAAGGACTTTGATGTGTCATTTTCTCTTACCTTTCCCAAGGCATCCTTTGTGTTCACCAAATGATTTGCAGTTTTAGACATACAGCTGTCAAAAGGCTGTTCCTTTGGTGTCTTTTATATCTTTTCCTCCTAAATTTCTGCTCTATTTGTGAAATGATTATCATTTCAGCTTCAAATTTCCACTGTCTTAAATATTAAATGATAACATTGCCAAGAGAACTGAATCCTTATTGTTGTCTCTCAATGTGTATTTCTGGAACCTGATTTTGAAAGATTTTTGATCTTAGTCTGTTAAATCCAGGCAAAATGGCTTCCTGCATAATGGAGCGATGCCGAAAGTGTTTTAAATGAGCGGCTGAAGTGCACACTAGATTAAATCAGAAACATGGGTTATTGCAACGGTCTCGATGTCTGGCAACTTTTGACTTCCACATCTTATTAGTTATATGCATTTTATCAAAAAAATTGATCACTTAGACACTGCAAAATGTACTACTTTAACaggaaactgaaaaaaaatcaaTTGCTCTCATTTGTCCCATGGAGACTGGCTAAATCTAGTCTGCCTACCAGTAGATTGTGTGGGAGGATGCTTTTGAGAATGTGTTGCTACCATTTTTATTTGCATTTTACTGGTTATGACATTTTAGTAAGTGATACCTTGTTCTTACTGTATTATAGAAAGAtctgttttttcttttttcctACACTGTTTATGGCAATAAAATGTATCATCTTACATtaattcttaatgtgtttgaatgGGATGGGTGAATAAGTAAAGGCAATTAAGTAGTTCTCTGAGAACACAAAGCAATGTGAACATAGAAGAAAAACTTTTTAATTTAATGGAGCAGGGCAGGGGTTTTGAAAAAGTTAACTCTGTATGGAACATGCATACATGTCCATTTAAGTTATTGTTGAGTATTCCCTACAAATTCTTTCTATGTTCGCAAGTGTCTTTCTGCCCACATTAGAAACAATGTATTGCATGCATGCAGAGAACCTAATTCCTCATCCTCAATGCTTTCCCCACATGATTACAACATAATGCAGAGTATATGTAGAATACCGTTTGGAGGCCTGTTATGCTCGAGGTGCAGGGACCGGatccttttcagtgtgtgtctgaATGCCAGACAGAATCTTTGTTCTGAATTTATGGTTCGTTGAACTTTGAgaacaggggtgtattcattatgaACGGTTTAAGAAGCAAACTGAGAAACAattgtttctattggacaaatttcAGGTAGGTCCCACCCTGTTtttatttgcttctgtttaaaacGTATTGCAACAATCGGTGTAATGAATACGCCCCCGAGCAAGAACGTTTGCTTTATTTTGAATAACCCAATATGTTTTAAattggccatttgttttgcagaGTCGATACAGCTGGAAAAAAAACAGGGTTTGGTATTTTGAACAATCTTTTAATAAAACAATTGAACTGTCTCACTGCTTACATGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2332578 lncRNA downstream 60578 423047 ~ 426644 (-) True G2038909
TU2332476 lncRNA downstream 275911 210587 ~ 211311 (-) True G2038809
TU2332475 lncRNA downstream 276645 210106 ~ 210577 (-) True G2038808
TU2332459 lncRNA downstream 296989 183037 ~ 190233 (-) False G2038798
TU2332733 lncRNA upstream 116238 611818 ~ 612167 (-) True G2039032
TU2333194 lncRNA upstream 282196 777776 ~ 777993 (-) True G2039458
TU2333196 lncRNA upstream 318887 814467 ~ 816586 (-) True defb4
TU2333259 lncRNA upstream 353372 848952 ~ 851621 (-) False G2039501
TU2333271 lncRNA upstream 355591 851171 ~ 861381 (-) False G2039501
XM_036964858.1 mRNA downstream 16649 456054 ~ 470573 (-) False LOC110507294
XM_036964863.1 mRNA downstream 16672 456052 ~ 470550 (-) False LOC110507294
XM_036964856.1 mRNA downstream 16672 456054 ~ 470550 (-) False LOC110507294
XM_036964857.1 mRNA downstream 16672 456054 ~ 470550 (-) False LOC110507294
XM_036964855.1 mRNA downstream 16672 456055 ~ 470550 (-) False LOC110507294
XR_005040060.1 mRNA upstream 25739 521319 ~ 523145 (-) True LOC118944766
XM_021587186.2 mRNA upstream 199611 695191 ~ 731033 (-) False LOC110507297
XM_021587187.2 mRNA upstream 199611 695191 ~ 731584 (-) False LOC110507297
XM_036965292.1 mRNA upstream 199611 695191 ~ 731584 (-) False LOC110507297
XM_036965291.1 mRNA upstream 199611 695191 ~ 731585 (-) True LOC110507297
TU2333132 other upstream 274394 769974 ~ 770737 (-) True LOC110507298
TU2335902 other upstream 2399996 2895576 ~ 2896391 (-) True G2041883
TU2335904 other upstream 2403407 2898987 ~ 2899388 (-) True G2041885
TU2336713 other upstream 2904999 3400579 ~ 3402997 (-) True G2042608
TU2336663 other upstream 3043604 3539184 ~ 3541753 (-) True LOC110507356

Expression Profile