RNA id: XR_005040060.1


Basic Information

Item Value
RNA id XR_005040060.1
length 1563
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC118944766
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 521319 ~ 523145 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACATGATTGGTAAGTGTCACAATTCAAATTTTGCCCTGAGATGTTTTTTAATGCTTGCTTTAATTGACCACAGCAGAGTTCAATATTGTGTGTGTCAGTATCCTTACACATATGAAAATATTCATTCTGTATGACACAGATAAAGGTAAGAAAAAAGTAATCTTCTCTCTAACACTTTAAATGTTAGGGGTGGACCTCATCTTAATCCAGGAATGGCAACAGCTGGTGTCTGATTGCGACTGCTCACTTTACCGAGTGGGTGGAGGCAATACCCATTAAGGTCAGTAAATGAGTATGCGCTTAACTATAAATACCCTTCTGTAACCCATTAAAAAGGGTGCTTATTAATGGGTTAACCAAAGGACGAGACTAACAAGGTCCATCATCGCCTTGGAGGTGACATCTTCAACCCACGGTTCACACATGATTAACttagtgtttgtctattgttgttttTGTATAACATACTTTCAGATCACTGAAACCCCACTTGATGTGGTGGAAGTTGTTGAACCAGATCAGAAAGCTTGAGGACCACCTTCAGGCACGGACTGAGAAGGATGTGGAGGTTTTTGACCAGTCAAGGTGAGACTGAACATCGACAAGGAGCAGGAGAAACGGAGCAGAATCAAGAAGGGGACCATATGCTACGACATCCGGGTGAATTACTTGGTTTAGAAGAAGGACGAAAGGAAGGGTTACCTCTGCGGAAGCCAACAATATTCTCCAGTTGGACGGTCGACCACTGAAAGCACTGACCCCCTACATTTCAGTGAAGCCCAATAGACAAAGTATGTCAAGCTTTGGttgacatttgagaaagcaaGAAATGGCAGTTATGCTGAACTTATAAAAATGTACCTCTTCAGTTTACCTCTCCAAATGACTTTAGGACCATCGACTGTCCAAGTGCCCCAGGAGGTATCCCATCCACCAGAACCTGTGAGTTCGGCTCAGTCTGATTCTCTGTGCTCTGAGTTGGAGGGGTACCAGCTTGATGTAGACTATACCTTCCAAAAGTGTTGAAAAATACCTATCTCCCATTTATAACACTGCACTAAGCCATCAAATTTTATAAGTATAACCGGGGTGTTTGCTTGTTTACAtctgtctcctaccctgttcccttTAACTCTGCTCTTGTTCTCCGGGACCTAGGAGTTATGCCCAACACCCAGATGTCTatccacctgatgtcctccattACCAAGCACCCTCTAACTTATCATTACATCGTCTACAGCTACATATTATCGTCATGTCATTATTTATCTTACTGTGCACATGAGATACGCAGGTTAACTAACAACACTAGCACTGCAAACACTCAGAACAAAGAAAGCAGCAGTGTCTGGACTTTGCAGTCTCCCTCTTCAAGTCCCCCTTAagagactggctgcctgttgacaACAAGTGACAGGCAGAACATCCGACACAGCAAAATCCGACACAGCAACCACCTCGTCAAAATTCCACACACCAGAATTCAGTATTTTATGAATTGTCATGTGAGTGTAAAACAAAATCTGTGAAAATAATTGAATGACACAACTTTACCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2332578 lncRNA downstream 94675 423047 ~ 426644 (-) True G2038909
TU2332476 lncRNA downstream 310008 210587 ~ 211311 (-) True G2038809
TU2332475 lncRNA downstream 310742 210106 ~ 210577 (-) True G2038808
TU2332459 lncRNA downstream 331086 183037 ~ 190233 (-) False G2038798
TU2332733 lncRNA upstream 88673 611818 ~ 612167 (-) True G2039032
TU2333194 lncRNA upstream 254631 777776 ~ 777993 (-) True G2039458
TU2333196 lncRNA upstream 291322 814467 ~ 816586 (-) True defb4
TU2333259 lncRNA upstream 325807 848952 ~ 851621 (-) False G2039501
TU2333271 lncRNA upstream 328026 851171 ~ 861381 (-) False G2039501
XM_021587184.2 mRNA downstream 25483 487222 ~ 495836 (-) False LOC110507295
XM_036964754.1 mRNA downstream 25483 490057 ~ 495836 (-) True LOC110507295
XM_021587182.2 mRNA downstream 25484 487222 ~ 495835 (-) False LOC110507295
XM_021587183.2 mRNA downstream 25484 487222 ~ 495835 (-) False LOC110507295
XM_021587185.2 mRNA downstream 25484 487222 ~ 495835 (-) False LOC110507295
XM_021587186.2 mRNA upstream 172046 695191 ~ 731033 (-) False LOC110507297
XM_021587187.2 mRNA upstream 172046 695191 ~ 731584 (-) False LOC110507297
XM_036965292.1 mRNA upstream 172046 695191 ~ 731584 (-) False LOC110507297
XM_036965291.1 mRNA upstream 172046 695191 ~ 731585 (-) True LOC110507297
XM_036965057.1 mRNA upstream 245860 769005 ~ 775985 (-) False LOC110507298
TU2333132 other upstream 246829 769974 ~ 770737 (-) True LOC110507298
TU2335902 other upstream 2372431 2895576 ~ 2896391 (-) True G2041883
TU2335904 other upstream 2375842 2898987 ~ 2899388 (-) True G2041885
TU2336713 other upstream 2877434 3400579 ~ 3402997 (-) True G2042608
TU2336663 other upstream 3016039 3539184 ~ 3541753 (-) True LOC110507356

Expression Profile