RNA id: XM_021587186.2


Basic Information

Item Value
RNA id XM_021587186.2
length 5423
RNA type mRNA
GC content 0.42
exon number 15
gene id LOC110507297
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 695191 ~ 731585 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTACTGATTTCGTTCTGAGCACAGGGCAGGTAAGACACGCGGGAGAGAACATAACTAGGAAGAGTGAACACCTATTTTAGGTGCTCAGCGCATACCAAGCGGCGATGCAACAGATTTGTGCAGGTTTTTAGGTGGAATATTTTTGTGCATTTATTGGATCCATTTTTGGAGGGGAATGGCATGTCTTATGGCGGCATTTTCTGTAAATAACGCCACTGTCACTAACTCCATCCTAATGAACACCAATGGGCCTCCTGATCTGATGCTGGACCCCAGGACTGTATGTGTATCTCTTGATGAAGTGGTATCCAATCATTTGAGCAGTCAACATACTCCATTATTAAATGGGCATCTCAAGAAAGTGGAGAACAGTCTAACTGAAGCCCAACGTTTTTCCTACCTGCCACATCGACCAGCAGTTAACATTGAATTCAAAGATGTCAGCTACTCAGTTCCAGAGGGACCATGGTGGAGAAAGAAAGGTTACAAGACTCTGCTGAAAGGGATCTCTGGAAAATTCACCAGCGGCTGCCTGGTGGCCATCATGGGTCCCTCAGGAGCTGGGAAATCTACGCTGATGAACATTCTGGCCGGCTACAGagagacagggatgaagggggAGATCTTGATCAATGGGCAGCCTCGTGACCTACGCTCTTTCAGGAAGGTCTCGTGCTACATCATGCAGGACGACATGCTTCTGCCTCACCTCACAGTACAGGAAGCCATGAtgGTGTCTGCTAATCTGAAGCTCCAGGAAAAGGATGAGGGCAAGAGAGACATGGTGAGGGAGATCCTGACGGCCCTGGGCCTGCTTGAGTGTGCGAAAACCCGAACGTCACATCTATCAGGGGGGCAGAGGAAAAGGCTGGCCATCGCCCTGGAGCTTGTCAACAACCCTCCCGTCATGTTTTTTGACGAACCCACCAGTGGCCTGGACAGTTCCTCCTGCTTCCAGGTGTTGTCTCTGCTGAAGGCCCTGGCCAATGGTGGCCGCACCGTCATCTGCACCATCCACCAGCCCAGCGCCAAGCTCTTTGAGCTCTTCAACAAGCTGTATGTCCTTAGTCAGGGCCAGTGTATCTACAGAGGGAATGTACCTAACCTGGTCCCCCATCTTAGAGAGCTGGGGCTCAACTGCCCAACGTACCACAACCCTGCAGACTTTGTGATGGAGGTGGCGTCTGGGGAGTACGGAGATCAGACGGCGCGTCTGGTGAAGGCCGTGCAGGAGAGGAAATGTGAGCAGGTCTACAAGACAGACATGAACAATGGACCCCTCAATCCCTTCCTGTGGCACAAATCGTCTGAGGAGGACTCCTCTTCCAGTGAGGGCTGCCACAGTTTCTCGGCCAGTTGTCTGACTCAGTTCTGCATCCTGTTCAAAAGGACGTTTCAAAGCATTATTAGAGATACGGTGCTGACTCACCTAAGAATCTGCTCTCACATTGGAATTGGGATTCTGATTGGCCTGCTCTACCTGGGCATCGGCAACGACGCCAAGAAAGTGCTCAGCAACTCTggcttcctcttcttctccatgCTCTTCCTCATGTTTGCTGCTCTAAtgcctactgttctgacctTCCCTTTAGAGATGGGAGTTTTCCTAAGAGAGCACTTGAACTACTGGTACAGTCTGAAGGCCTACTATCTGGCCAAGACTATGGCGGACCTCCCCTTCCAGATAGTGTTCCCAGTCGCCTACTGCAGCATCGTCTACTGGATGACGTCCCAGCCACCTGACGCTGTGCGTTTCATCCTTTTCTTAGCCCTGGGAGTCCTCACCTCTCTTGTGGCTCAGTCTCTGGGCCTGCTGATAGGAGCGGCTTCCACCTCTCTACAGGTTGCCACGTTTGTAGGTCCGGTGACTGCCATACCTGTACTGCTTTTCTCTGGCTTCTTCGTCAGTTTCGACACAATTCCGTGGTATCTTCAGTGGATGTCATACATTTCATATGTCAGGTATGGCTTTGAAGGTGTCATCCTCTCCATCTATGGCCTGGACCGGGAGGACCTCCACTGCAACAAGGATGAAACATGCCATTTCCAGAAGTCGGAGGCCATCTTGAAAGAGCTTGACGTGGAAGATGCCAAACTGTATCTTGACTTCATAGTGCTCGGCATGTTCTTTGTGAGCCTCCGCCTCCTCGCATACTTTGTGCTGCGCTATAAGATCAGTGCAGAGAGGTAGACTGGAGAGTGGGGGTAGGGGGAAGAAGGCCTAGATCGCTTGCATGCTGGAATACCGCTTCTGGAGACCTCCAGGCAGTGACCAGAAACACACCATGCACACTGCAGGAATTATGGGTACACTATGTGGCGGTGGCACGAAGGGGCTGGATTTTGACACTtgactggccaatcagaacattctccatggctaaatatgtggttgctttacagtcttttatgtttTGCATTGTCATCAACGCCAATTTGAATGTCAGTCCGCTATAGCCTAGTTTGTTAAATAGCCTATAGAACCAAACTAACTAAATGTAGGCCTACCCATCTTTCCTAAATATATTGAACATGTTGGCAGGCCACATTGCTCTATGTAATTGCATTGCTTCAATATGGAAATATATTATTAaacatagcattcacactgatatgagctaggcctactgtaaatgtcATTATGGCTGAGCCATGGACATGCCAAACGTTGTCAATAAGCAAGATGTAATTCACTATTGATGAGGCCTAAAAAGAGTGAATCATTCTAATCAAATTCTAATCAAAAGAAAAAGTTGTTTTAAGTAGGCTATTcctaaatacatgtttaaatgttttgtaGTAAACAAGTGTTTcaaatgacatcatcaaccaattagtagacCATTAGTAGGCAATGTTTACTCACAATTGGTCAAAATCACATTATGCACaccgatgatgtcattggaaacacttatcttcctctatctttttttttacaacaaaacatagaaactcaCCATTTTcacatgttgatgttggggtgatgatgaatatgaagttggaAAAAATGCTTAAAGTTTCCCTTTAAGGGTAGACTGCAGGATGGCTTGGTTTGTCATATGAAATGGAATCATATGAAACGGAAAACAAGCAGGAAAATAAGTTATAAAGGGTCACCAGCATTatctcatctctcctttcatGATGGGCATATGGACACAAGTAGCCTGCGTGGAGGGTTTTTTACGCACGTCCAAAACGGGAGCTGGCTAAAATAACAtgcatatatattatattatattatataaggGGATGTCCACTTACTGTTTTTTCTATTTTTCTGCTCCCAaactttcatttttaattaagcTTTGTTGGTTAAGATGTATTTCAAAGCGGTCTCACTAGCGAAACCCTTTATTGTTAGGCTTGGCTACTTGGCGAACGCATTGGGCAGGACAAAACAACTGTCTTCATTGAGAGGAAGGGAGGATTATGCACAATTTTTAATCAAATGAAACCAAATGAGAAAACATATCCTCTCTTCTTCCATGAGTATAAGGGTCACAGCTGGATAGGTTGCGCTTCAGCTCACAAAATCCTTGCCATTACCAACCGCAAAGACCGGCTTTTCATTGGTCTTAAGTCTCCCGATATGCGCTGCATGAAATTGTCACTTTTGAACTTGTTTTCAAGGGCACAGAAATGATATGACCTCATGGCATCTTGTCAATATACATGGCTTTCATTTGTTTACCATAGTGAGAGGAACATGCACTGGCCACATGTGTAAACCTCAAAAATATTGGAATGAATAGCAAAGTGAAtgcattaaagggatagttcacccaaattacaaaattacattggTTTTCTTACCCTGTAAGTAGTCTATGGACAAGTtaagacagcaatccatgctttggttttgtttattTGACCACTGTCTCCAAATGCTAACTTTTTAGCATTCATGTCATAATTACAATATGTCGTTagtgtgaactatccctttaagttgTGAATTAGGCATTAAAACGATATACAGGTTGCATAACATGACAGCAGAACTGCAAGAAACAAATTAAGCTGCTTAATCTCTTTAGTGGTTTACTTATATGGCCTGAaaaatatactttatatgttTTTAATTAAATATCAGACAATTTCATACTGCCTTTGACAACCTAAGATTATATTCTCATCATCTGTAAGGTTCTACTGAcaacagggttggggtcaatttatCATTGAATTGGAATTTGAGTTAACTTCCCGAATTGACCGACTTCATTTCGAATTGACCCCAAACCTGACAGACAAATACTCCGCTGGACATAGTCATGGTTACAACACACCATCCATATGCATTAAAACATATGGAACCAGCTGCACATTGGAACTAATAATGTTGATTCAATTGCACGTCAATATTGATTATCAAGTCTATATTCAATTCCATAATTACTTCACATCAAGAATCATGTACATTTTCTGAAAAGTGTTGGCCTAGAAAGTATGATGAATTTTTTAAAACTTGAAAACAAATTACACACTTTACATAAAGAGATACTGCAAATATCAATGCAAAACCTTTTGCAAAACATGATAATATGCTTTTGTAGATTGGTATGTTTTTGTCATTACTTTATTTTGTGTTGCAATATTTCACACACAGAGGTTGAAACTCTAATAAAACACTGCAGAGGAAAGGTTGCATGTTACACTATTTCAAAGCTATGTTTTAATGGCAGTGTTATGAACATGTTTTCAGTACATAGGATAGtattattaaatatgtttaattGGCTTGCTGGGGAGGAGGCTTTAAAAGTTTAATGTTTAGACAAACCCCACTCTGAAGTTCTGAACTCATTGGAACAGCTTTCTATCAAGAATGTGGGGCATTACCAAattatttttttgtacattggTTTGTTTTTCCGATTGTTTAGCTTTTCCTCCGTTGAATCCTCTTTATATCTACACGATACACTgattatacaaaacattaagaacacccacctaatattgagttgcacctcctccctttcttcctcagaacagcctcaatttgttgagCCATGGACTCTAATGtatcaaagcttaaaaatccttctttaacctgtctcctccccttcgtctacattgattgaagtggattgaacaagtgacatcaataagggatcataggtcagtctgtcatggaaggagcaggtgtccttaatgttttgtatactcagtgtagattACCTCATGGTAAACTGCAGACCCTTTTATCTACCAAAATAATCTACATCCCGCTCCATAATGTTTTGTAGGTCGATTCTTGCATCAAACTAAAGCTGTATTTGAATAATGTTTTATTTTCAAGTGTTGAGATACTCAGTTTATAGCTCATATTTTCTGCAACGTGTGAACTGTTACGTACTGACATTGTAGATGAATGAAATTAATAAAGTTGCAATATTTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2332733 lncRNA downstream 83024 611818 ~ 612167 (-) True G2039032
TU2332578 lncRNA downstream 268547 423047 ~ 426644 (-) True G2038909
TU2332476 lncRNA downstream 483880 210587 ~ 211311 (-) True G2038809
TU2332475 lncRNA downstream 484614 210106 ~ 210577 (-) True G2038808
TU2332459 lncRNA downstream 504958 183037 ~ 190233 (-) False G2038798
TU2333194 lncRNA upstream 46743 777776 ~ 777993 (-) True G2039458
TU2333196 lncRNA upstream 83434 814467 ~ 816586 (-) True defb4
TU2333259 lncRNA upstream 117919 848952 ~ 851621 (-) False G2039501
TU2333271 lncRNA upstream 120138 851171 ~ 861381 (-) False G2039501
TU2333264 lncRNA upstream 127118 858151 ~ 861381 (-) True G2039501
XR_005040060.1 mRNA downstream 172046 521319 ~ 523145 (-) True LOC118944766
XM_021587184.2 mRNA downstream 199355 487222 ~ 495836 (-) False LOC110507295
XM_036964754.1 mRNA downstream 199355 490057 ~ 495836 (-) True LOC110507295
XM_021587182.2 mRNA downstream 199356 487222 ~ 495835 (-) False LOC110507295
XM_036965057.1 mRNA upstream 37972 769005 ~ 775985 (-) False LOC110507298
XM_021587188.2 mRNA upstream 37972 769005 ~ 776178 (-) False LOC110507298
XM_021587190.2 mRNA upstream 56124 787157 ~ 799246 (-) True LOC110507299
NM_001195169.1 mRNA upstream 84465 815498 ~ 816491 (-) False defb4
XM_021587196.2 mRNA upstream 130465 861498 ~ 1020604 (-) False col4a4
TU2333132 other upstream 38941 769974 ~ 770737 (-) True LOC110507298
TU2335902 other upstream 2164543 2895576 ~ 2896391 (-) True G2041883
TU2335904 other upstream 2167954 2898987 ~ 2899388 (-) True G2041885
TU2336713 other upstream 2669546 3400579 ~ 3402997 (-) True G2042608
TU2336663 other upstream 2808151 3539184 ~ 3541753 (-) True LOC110507356

Expression Profile